JSB-UCLA / scReadSimLinks
A single cell sequencing read simulator.
☆33Updated 9 months ago
Alternatives and similar repositories for scReadSim
Users that are interested in scReadSim are comparing it to the libraries listed below
Sorting:
- SCASA: Single cell transcript quantification tool☆21Updated last year
- binned motif enrichment analysis and visualisation☆40Updated 2 weeks ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ☆22Updated last year
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆32Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- ☆38Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- ☆23Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- ☆17Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- An R package to analyze single-cell V(D)J data☆28Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Cellsnake tool main repo☆33Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Motif manipulation functions for R.☆29Updated 2 months ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆11Updated 3 years ago
- Time-Course Multi-Omics data integration☆25Updated last year
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆16Updated 2 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆18Updated 3 months ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated 3 weeks ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 4 months ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 10 months ago
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year