JSB-UCLA / scReadSimLinks
A single cell sequencing read simulator.
☆33Updated last year
Alternatives and similar repositories for scReadSim
Users that are interested in scReadSim are comparing it to the libraries listed below
Sorting:
- binned motif enrichment analysis and visualisation☆43Updated 2 weeks ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ☆23Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Model-based analysis of APA using 3' end-linked reads☆10Updated 4 years ago
- ☆41Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- SCASA: Single cell transcript quantification tool☆22Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- scover☆24Updated 2 years ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated last month
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Updated last year
- An R interface to the MEME Suite☆53Updated 5 months ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- interactive plots for differential expression analysis☆34Updated 4 months ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- ☆18Updated last year
- ☆20Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago