A single cell sequencing read simulator.
☆34Oct 14, 2024Updated last year
Alternatives and similar repositories for scReadSim
Users that are interested in scReadSim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆30Nov 2, 2024Updated last year
- A robust DE test method that accounts for the uncertainty in pseudotime inference☆40Mar 2, 2025Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆125Sep 29, 2025Updated 11 months ago
- ☆20Jul 28, 2026Updated last month
- Nextflow implementation of SpliZ☆15Aug 21, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Jul 13, 2026Updated 2 months ago
- ☆22Jun 17, 2024Updated 2 years ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 6 years ago
- ☆34Jul 7, 2026Updated 2 months ago
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…☆11Apr 16, 2026Updated 5 months ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Aug 26, 2026Updated 3 weeks ago
- ☆13Jul 28, 2026Updated last month
- Implementation of the treeSeg algorithm as an R package.☆14Feb 2, 2026Updated 7 months ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 4 years ago
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 4 years ago
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Aug 27, 2026Updated 3 weeks ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 6 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- ☆12Apr 26, 2021Updated 5 years ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 8 months ago
- Command line utility for manipulating FASTQ files☆103Aug 12, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15Jul 11, 2023Updated 3 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- Single-cell epigenomics analysis tools☆323Sep 12, 2026Updated last week
- Repository for Discussions and Materials about The Carpentries Workbench☆20Updated this week
- ☆24Jun 7, 2024Updated 2 years ago
- ☆94Sep 3, 2024Updated 2 years ago
- A program for the analysis of single cell nanopore long read data☆22Jul 1, 2025Updated last year
- Snakemake workflow to benchmark scRNA-seq data simulators☆15Aug 10, 2022Updated 4 years ago
- Single Cell Consensus Clustering with Speed☆22Dec 12, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast API server for calculating linkage disequilibrium☆20Apr 24, 2025Updated last year
- Stitch multiple Visium slides together☆17Oct 16, 2025Updated 11 months ago
- Enabling differential allele-specific analysis☆12Sep 10, 2026Updated last week
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated last year
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆18Feb 10, 2023Updated 3 years ago
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago