JSB-UCLA / scReadSim
A single cell sequencing read simulator.
☆27Updated 5 months ago
Alternatives and similar repositories for scReadSim:
Users that are interested in scReadSim are comparing it to the libraries listed below
- ☆30Updated 2 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- ☆20Updated last year
- ☆29Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- ☆39Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- ☆46Updated 7 months ago
- ☆21Updated 4 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 6 months ago
- scover☆23Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆20Updated last year
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- R/Bioconductor package for working with 10x scATACseq data☆39Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Cell type purification by single-cell transcriptome-trained sorting☆14Updated 5 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 2 weeks ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago