Code relevant to sci-ATAC-seq of Drosophila embryogenesis.
☆22Jun 9, 2019Updated 7 years ago
Alternatives and similar repositories for fly-atac
Users that are interested in fly-atac are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repo for website and other code for mouse sci-ATAC-seq project☆30Oct 1, 2020Updated 5 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 5 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- ☆62Mar 18, 2026Updated 6 months ago
- Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles☆15Aug 3, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 6 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 8 months ago
- Single cell epigenomic clustering based on accessibility pattern☆24Nov 9, 2022Updated 3 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆13Feb 27, 2020Updated 6 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆50Sep 1, 2023Updated 3 years ago
- ☆28Jan 28, 2020Updated 6 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 9 years ago
- <<------ Use SnapATAC!!☆26Mar 15, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Jun 11, 2019Updated 7 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- ☆15Oct 7, 2019Updated 6 years ago
- ☆23Jul 3, 2019Updated 7 years ago
- DESeq2 or edgeR☆22Sep 28, 2016Updated 9 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Sep 20, 2024Updated 2 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Feb 9, 2021Updated 5 years ago
- ATAC-seq lab for BIOINF545☆24Feb 17, 2026Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Base CRUK Cambridge Institute RNAseq Course☆20Aug 30, 2019Updated 7 years ago
- A self-contained repository of all code needed for SPRITE analysis☆22Jul 28, 2021Updated 5 years ago
- Empirical Bayes methods for single cell data☆18Oct 12, 2020Updated 5 years ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆40Aug 2, 2021Updated 5 years ago
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- ☆13Dec 7, 2020Updated 5 years ago
- ☆16Updated this week
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Mar 7, 2022Updated 4 years ago
- A DL-based framework for sequence and shape motif identification in the human genome☆12May 26, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Consistent Clusters for scRNA-seq☆12Oct 6, 2021Updated 4 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 10 years ago
- ☆150Jan 7, 2019Updated 7 years ago
- Homework for STAT 205A - Berkeley☆13Dec 9, 2014Updated 11 years ago
- Virtual Select widget for shiny apps☆16May 11, 2022Updated 4 years ago
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆21Jul 9, 2019Updated 7 years ago
- Molecular Data Provider☆10Dec 17, 2025Updated 9 months ago