A hybrid deep convolutional neural network for predicting chromatin accessibility
☆25Apr 10, 2019Updated 7 years ago
Alternatives and similar repositories for Deopen
Users that are interested in Deopen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hi-C data super-resolution with generative adversarial networks☆15Jul 6, 2021Updated 4 years ago
- ☆19Aug 20, 2018Updated 7 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆32Nov 14, 2022Updated 3 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆15Nov 5, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation☆11Dec 19, 2016Updated 9 years ago
- ☆14May 26, 2020Updated 5 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)☆10Mar 7, 2018Updated 8 years ago
- A deep learning package for predicting TF binding☆43Jan 23, 2020Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Aug 27, 2024Updated last year
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 2 years ago
- ☆53Nov 14, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Deep neural networks for predicting CpG methylation☆152Sep 30, 2019Updated 6 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 8 years ago
- Tutorial on the usage of Rdkit, Pandas, sklearn, machine learning, descriptor calculation, etc.. in the context of bioactivity predictive…☆14Sep 28, 2014Updated 11 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Jul 18, 2019Updated 6 years ago
- ☆16Jun 27, 2025Updated 10 months ago
- Docker image for the DeepBind method.☆16Nov 7, 2015Updated 10 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆32Feb 22, 2018Updated 8 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Aug 17, 2016Updated 9 years ago
- Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individua…☆11Feb 21, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Winner of Grand Prize in Sustainability & Meta Best Innovation Award. We mitigate overfishing through AI-augmented satellite imagery and …☆28Feb 20, 2023Updated 3 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆29Oct 3, 2017Updated 8 years ago
- ☆21Mar 20, 2017Updated 9 years ago
- ☆21Jul 3, 2019Updated 6 years ago
- ☆22Jul 2, 2020Updated 5 years ago
- Machine Learning Projects☆25Jan 8, 2020Updated 6 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44May 29, 2018Updated 7 years ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Aug 9, 2017Updated 8 years ago
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- For training very deep networks☆10Jun 12, 2017Updated 8 years ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- lncRNA-screen☆25Apr 19, 2017Updated 9 years ago
- Low-rank Highway Networks☆13Mar 11, 2016Updated 10 years ago
- parallel-fastq-dump implementation in bash script☆41Nov 28, 2019Updated 6 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Feb 7, 2024Updated 2 years ago
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆34Feb 5, 2026Updated 2 months ago