Alternatives and similar repositories for Deopen:

Users that are interested in Deopen are comparing it to the libraries listed below

• p-koo / learning_sequence_motifs
  "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy
  ☆32Updated 5 years ago
• uci-cbcl / FactorNet
  A deep learning package for predicting TF binding
  ☆42Updated 5 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• hendrixlab / mRNN
  mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.
  ☆19Updated 6 years ago
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 4 years ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆28Updated 2 years ago
• ma-compbio / CTCF-MP
  ☆11Updated 4 years ago
• arefeen / DeepPASTA
  ☆10Updated 4 years ago
• QijinYin / DeepHistone
  ☆17Updated 6 years ago
• zhangyan32 / HiCPlus
  ☆31Updated 5 years ago
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 2 years ago
• ushaham / BatchEffectRemoval
  ☆55Updated 4 years ago
• cmap / cmapM
  Connectivity Map analysis in MATLAB
  ☆44Updated 3 years ago
• minxueric / ismb2017_lstm
  Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding
  ☆14Updated 6 years ago
• ma-compbio / PEP
  ☆14Updated 4 years ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆46Updated 2 years ago
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆51Updated 4 years ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 5 years ago
• kundajelab / MPRA-DragoNN
  Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…
  ☆12Updated 3 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆17Updated 2 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated 2 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated last year
• fabriziocosta / GraphEmbed
  Compute a 2D embedding of a data matrix given supervised class information.
  ☆12Updated 5 years ago
• ohlerlab / DeepRiPe
  ☆24Updated 11 months ago
• klarman-cell-observatory / Perturb-CITE-seq
  ☆15Updated 2 years ago
• TeoSakel / deep-drug-response
  ☆19Updated 4 years ago
• smaslova / AI-TAC
  ☆27Updated last year
• Dongwon-Lee / lsgkm
  ☆50Updated last year
• bowang87 / SIMLR_PY
  Python Implementation of SIMLR for single-cell visualization and analysis
  ☆23Updated 2 years ago
• luslab / arshamg-scrnaseq-wgan
  Wasserstein Generative Adversarial Network for analysing scRNAseq data
  ☆34Updated 4 years ago