mikessh / mageriLinks
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
☆21Updated 8 years ago
Alternatives and similar repositories for mageri
Users that are interested in mageri are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ☆26Updated last year
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 months ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- Adapters for trimming☆30Updated 6 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated 3 months ago
- ☆25Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 9 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- R package for DNA methylation analysis☆19Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago