bioinfo-biols / CIRI-longLinks
Circular RNA Identification for Nanopore Sequencing
☆19Updated last year
Alternatives and similar repositories for CIRI-long
Users that are interested in CIRI-long are comparing it to the libraries listed below
Sorting:
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- New version of JACUSA -> 2.0☆26Updated 3 weeks ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆44Updated 2 months ago
- ☆11Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 3 months ago
- ☆26Updated 3 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- RiboPlotR package for Ribo-plot☆15Updated last year
- A list of alternative splicing analysis resources☆43Updated 2 months ago
- direct comparison of circular and linear RNA expression☆23Updated 4 years ago
- bioinformatic pipeline for GLORI☆20Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated last year
- ☆23Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- Reconstruction of focal amplifications with long reads☆21Updated last week
- ☆59Updated 3 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 10 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 4 months ago
- Quantitation and visualization of differential alternative splicing events☆10Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 6 months ago
- processing 10x genomics reads☆26Updated 5 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 10 months ago