bioinfo-biols / CIRI-longLinks
Circular RNA Identification for Nanopore Sequencing
☆21Updated last year
Alternatives and similar repositories for CIRI-long
Users that are interested in CIRI-long are comparing it to the libraries listed below
Sorting:
- ☆58Updated last month
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 6 months ago
- Estimate locus specific human LINE-1 expression.☆37Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Quantification of transposable element expression using RNA-seq☆74Updated last year
- Tutorial Website☆59Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- ☆11Updated last month
- ☆62Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆49Updated last week
- A list of alternative splicing analysis resources☆46Updated 5 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Docker for 4DN Hi-C processing pipeline☆61Updated 9 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- Software for Quantifying Interspersed Repeat Expression☆61Updated 3 years ago
- Micro DNA identification☆24Updated 4 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated last month
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 6 months ago
- New version of JACUSA -> 2.0☆27Updated 3 weeks ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year