chizksh / digenome-toolkit2Links
Digenome-toolkit ver2.
☆16Updated 3 years ago
Alternatives and similar repositories for digenome-toolkit2
Users that are interested in digenome-toolkit2 are comparing it to the libraries listed below
Sorting:
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 2 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 4 years ago
- ☆22Updated 6 months ago
- ☆36Updated 2 years ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Updated last year
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- WDL workflows for variant calling and assembly using ONT☆35Updated 3 weeks ago
- Master of Pores 2☆23Updated 6 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 4 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆28Updated last year
- ☆29Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- New version of JACUSA -> 2.0☆27Updated last month
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- for visual evaluation of read support for structural variation☆54Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆34Updated 6 years ago
- ☆23Updated 2 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last month