Digenome-toolkit ver2.
☆16Nov 1, 2021Updated 4 years ago
Alternatives and similar repositories for digenome-toolkit2
Users that are interested in digenome-toolkit2 are comparing it to the libraries listed below
Sorting:
- CHANGE-seq analysis pipeline☆11Dec 18, 2025Updated 2 months ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆22Jul 26, 2025Updated 7 months ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 5 years ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated last month
- CRISPR Indel, base edit analysis☆11Aug 1, 2020Updated 5 years ago
- splicing and feature maps for RBPs☆25Apr 19, 2022Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated last year
- ☆10Mar 24, 2025Updated 11 months ago
- ☆12Nov 23, 2020Updated 5 years ago
- nRex: Germline and somatic single-nucleotide, short indel and structural variant calling☆12Sep 19, 2025Updated 5 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Nov 17, 2025Updated 3 months ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Apr 1, 2024Updated last year
- Software for performing UDiTaS sequencing analysis.☆15Dec 22, 2022Updated 3 years ago
- An unbiased method for genome-wide CBE off-targets assessment☆13Mar 9, 2023Updated 2 years ago
- KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…☆13Mar 6, 2023Updated 2 years ago
- ☆18Jan 13, 2025Updated last year
- ☆15Aug 6, 2020Updated 5 years ago
- ☆16Jan 15, 2025Updated last year
- A tool for identifying active prophage elements through read mapping☆13Oct 9, 2023Updated 2 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆20Jul 9, 2019Updated 6 years ago
- ☆18Sep 6, 2022Updated 3 years ago
- ☆23Aug 20, 2018Updated 7 years ago
- Simple script to generate whole-genome coverage plots☆19Jun 23, 2015Updated 10 years ago
- All source code of the crispor.org website☆87Updated this week
- interactive Multi Objective K-mer Analysis☆23Mar 5, 2023Updated 2 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- One stop MIP design and analysis☆24Sep 30, 2020Updated 5 years ago
- Variant-aware CRISPR off-target nomination☆24Jan 26, 2026Updated last month
- ☆23Feb 12, 2026Updated 2 weeks ago
- ☆23Feb 16, 2026Updated 2 weeks ago
- Rare cell identification tool for single cell datasets☆22Jun 14, 2022Updated 3 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆96Aug 31, 2022Updated 3 years ago
- ☆22Oct 6, 2023Updated 2 years ago
- A reference viral database (RVDB)☆27Nov 30, 2018Updated 7 years ago
- ☆25May 14, 2021Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Jan 6, 2026Updated last month
- new repo☆28May 18, 2021Updated 4 years ago
- ☆27Dec 22, 2025Updated 2 months ago