r3fang / snATACLinks
<<------ Use SnapATAC!!
☆26Updated 6 years ago
Alternatives and similar repositories for snATAC
Users that are interested in snATAC are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- ☆34Updated 6 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ☆34Updated 6 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆47Updated 9 months ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- ☆51Updated last year
- ☆17Updated 6 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆28Updated 6 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 5 years ago
- ☆12Updated 6 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 8 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- ☆28Updated 4 years ago