r3fang / snATACLinks
<<------ Use SnapATAC!!
☆26Updated 6 years ago
Alternatives and similar repositories for snATAC
Users that are interested in snATAC are comparing it to the libraries listed below
Sorting:
- ☆34Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- ☆51Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- ☆34Updated 6 years ago
- ☆28Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 2 months ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- ☆20Updated 6 years ago
- ☆17Updated 6 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- ☆29Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 5 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 7 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago