r3fang / snATACLinks
<<------ Use SnapATAC!!
☆25Updated 6 years ago
Alternatives and similar repositories for snATAC
Users that are interested in snATAC are comparing it to the libraries listed below
Sorting:
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 10 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ☆20Updated 6 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- ☆33Updated 6 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆34Updated 6 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- ☆12Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆17Updated 6 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆27Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- ☆15Updated last year
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- ☆19Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- ☆49Updated 11 months ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 2 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- scRNA-seq cell type identification☆43Updated 5 years ago
- binned motif enrichment analysis and visualisation☆40Updated 2 weeks ago
- Single-cell Case Control Analysis☆50Updated 8 months ago