r3fang / snATACLinks
<<------ Use SnapATAC!!
☆25Updated 6 years ago
Alternatives and similar repositories for snATAC
Users that are interested in snATAC are comparing it to the libraries listed below
Sorting:
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 9 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆32Updated 5 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- ☆34Updated 5 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆38Updated 5 years ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆28Updated 6 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- ☆16Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 2 months ago
- ☆27Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- ☆16Updated 5 years ago
- Single-cell copy number calling and event history reconstruction.☆24Updated 5 months ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated 11 months ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- ☆18Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆40Updated 6 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago