Alternatives and similar repositories for abifpy

Users that are interested in abifpy are comparing it to the libraries listed below

• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆109Updated 4 years ago
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆41Updated 5 years ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆86Updated 8 years ago
• aquaskyline / SOAPdenovo-Trans
  SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…
  ☆36Updated 2 years ago
• brentp / cruzdb
  python access to UCSC genomes database
  ☆136Updated 5 years ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆126Updated 9 months ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• dmnfarrell / smallrnaseq
  small rna-seq analysis package
  ☆30Updated 3 years ago
• mgymrek / pybamview
  Browser based application for viewing bam alignments
  ☆56Updated 9 years ago
• molgenis / capice
  ☆27Updated last year
• jwintersinger / kablammo
  Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.
  ☆65Updated 3 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated 2 weeks ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• acg-team / tral
  Tandem Repeat Annotation Library
  ☆25Updated 2 years ago
• brwnj / bcl2fastq
  NextSeq specific bcl2fastq2 wrapper.
  ☆55Updated 4 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated 2 months ago
• igvteam / igv.js-flask
  Example project for integrating igv.js and flask
  ☆26Updated 8 months ago
• ExpressionAnalysis / ea-utils
  Automatically exported from code.google.com/p/ea-utils
  ☆96Updated 2 years ago
• lpantano / seqcluster
  small RNA analysis from NGS data
  ☆38Updated last year
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆93Updated 6 months ago
• michal-stuglik / django-blastplus
  simple django app for blast search
  ☆18Updated this week
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆42Updated 5 months ago
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆56Updated 5 years ago
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆63Updated 9 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆64Updated 7 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• gear-genomics / tracy
  Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
  ☆120Updated 2 months ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated 2 months ago
• mlin / PhyloCSF
  Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions
  ☆71Updated 2 years ago