antigenomics / vdjvizLinks
⚙️ A lightweight immune repertoire browser
☆27Updated 5 years ago
Alternatives and similar repositories for vdjviz
Users that are interested in vdjviz are comparing it to the libraries listed below
Sorting:
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- ☆19Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Filters for false-positive mutation calls in NGS☆31Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- An R package for predicting HR deficiency from mutation contexts☆29Updated 5 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- Cloud-based single-cell copy-number variation analysis tool☆51Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ☆36Updated 6 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆29Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆64Updated 10 months ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 4 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated 2 years ago