π A lightweight immune repertoire browser
β28Dec 10, 2019Updated 6 years ago
Alternatives and similar repositories for vdjviz
Users that are interested in vdjviz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of immune repertoire sequencing resultsβ145Aug 20, 2026Updated 2 weeks ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.β400Updated this week
- β13Sep 18, 2017Updated 8 years ago
- β11Oct 25, 2022Updated 3 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencingβ28Dec 16, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.β11Dec 27, 2022Updated 3 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing readsβ16Dec 5, 2023Updated 2 years ago
- High-throughput mapping and domain partitioning of antigen receptor sequencesβ56Aug 15, 2026Updated 2 weeks ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amaβ¦β20Sep 28, 2022Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.β29Oct 11, 2019Updated 6 years ago
- Clonality inference in multiple tumor samples using phylogenyβ14Sep 12, 2017Updated 8 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metricsβ14Nov 21, 2019Updated 6 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.β18Aug 18, 2022Updated 4 years ago
- β26Dec 4, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NGSToolsβ16Mar 3, 2017Updated 9 years ago
- An interactive browser for the VDJdb databaseβ16Aug 28, 2026Updated last week
- Fork of https://bitbucket.org/mcgranahanlab/lohhlaβ18Feb 19, 2020Updated 6 years ago
- β11May 21, 2024Updated 2 years ago
- picking up low allelic-fraction, somatic variants from tumor samplesβ14Jan 4, 2018Updated 8 years ago
- SARS-CoV-2 Deep Sequencingβ14Apr 22, 2020Updated 6 years ago
- Software and test files for Recon: Reconstruction of Estimated Communities from Observed Numbersβ14Dec 16, 2025Updated 8 months ago
- Zhou & Stephens (2014) GEMMA multivariate linear mixed modelβ14Oct 24, 2020Updated 5 years ago
- Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire (mirror, please go to http://gitlab.vidjil.org)β32Jun 29, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Identifying recurrent mutations in cancerβ40Mar 4, 2021Updated 5 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumorsβ172Jan 28, 2026Updated 7 months ago
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.β40Jun 8, 2020Updated 6 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:β54Jan 7, 2026Updated 7 months ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.β15Feb 17, 2025Updated last year
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.β71Aug 22, 2021Updated 5 years ago
- Ultra-fast, high-performing structural variation (SV) detectorβ24Apr 26, 2023Updated 3 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.β118Sep 2, 2024Updated 2 years ago
- Website for the precision medicine workshopβ49May 8, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A python tool to detect internal tandem duplication with robust variant allele frequency estimationβ13Jul 23, 2026Updated last month
- BAMixChecker: A fast and efficient tool for sample matching checkupβ16Jun 12, 2022Updated 4 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorinβ¦β11Apr 19, 2016Updated 10 years ago
- Simple matching of HTS samples based on HLA typingβ14Jan 4, 2017Updated 9 years ago
- β10May 17, 2017Updated 9 years ago
- β11May 26, 2023Updated 3 years ago
- Convert CWL to WDLβ17Oct 17, 2016Updated 9 years ago