🛜 A lightweight immune repertoire browser
☆28Dec 10, 2019Updated 6 years ago
Alternatives and similar repositories for vdjviz
Users that are interested in vdjviz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of immune repertoire sequencing results☆147Updated this week
- High-throughput mapping and domain partitioning of antigen receptor sequences☆56Updated this week
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆404Oct 23, 2026Updated last week
- An interactive browser for the VDJdb database☆16Oct 18, 2026Updated 2 weeks ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Sep 18, 2017Updated 9 years ago
- ☆11Oct 25, 2022Updated 4 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Dec 27, 2022Updated 3 years ago
- Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire (mirror, please go to http://gitlab.vidjil.org)☆33Jun 29, 2026Updated 4 months ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆28Dec 16, 2021Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Sep 28, 2022Updated 4 years ago
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 6 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆171Jan 28, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 4 years ago
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 5 months ago
- Matching T-cell receptor repertoires to a database of antigen specificities☆39Oct 21, 2026Updated last week
- 📝 [Tutorial] RepSeq data mining basics in R☆10Mar 13, 2019Updated 7 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆55Jan 7, 2026Updated 9 months ago
- An R Interface to the ImmuneSpace database portal☆24Nov 28, 2023Updated 2 years ago
- ☆26Dec 4, 2019Updated 6 years ago
- Clonality inference in multiple tumor samples using phylogeny☆14Sep 12, 2017Updated 9 years ago
- NGSTools☆16Mar 3, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 4 years ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆24Sep 10, 2023Updated 3 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- ☆11May 21, 2024Updated 2 years ago
- ☆57Mar 31, 2020Updated 6 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- Zhou & Stephens (2014) GEMMA multivariate linear mixed model☆14Oct 24, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆23May 21, 2024Updated 2 years ago
- HapMuC: Somatic Mutation Calling Using Heterozygous Germ Line Variants Near Candidate Mutations (Bioinformatics)☆10Jun 7, 2015Updated 11 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- Identifying recurrent mutations in cancer☆40Mar 4, 2021Updated 5 years ago
- Software and test files for Recon: Reconstruction of Estimated Communities from Observed Numbers☆14Dec 16, 2025Updated 10 months ago
- mapping somatic variants to cell barcodes in scRNA-Seq data☆11Sep 21, 2026Updated last month
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆72Aug 22, 2021Updated 5 years ago