epigen / crop-seqLinks
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
☆31Updated 7 years ago
Alternatives and similar repositories for crop-seq
Users that are interested in crop-seq are comparing it to the libraries listed below
Sorting:
- ☆59Updated 11 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 8 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆30Updated 7 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- ☆34Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- scWGCNA☆61Updated 2 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- ☆55Updated 6 months ago
- ☆55Updated 4 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆25Updated 6 years ago
- ☆63Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Fast motif matching in R☆46Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- ☆33Updated 6 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago