epigen / crop-seq
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
☆29Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for crop-seq
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆33Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- ☆31Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- ATAC-seq lab for BIOINF545☆25Updated 7 months ago
- epigenome analysis to rank transcription factors☆30Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆72Updated 2 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 2 months ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆26Updated 3 years ago
- <<------ Use SnapATAC!!☆25Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 4 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆41Updated 11 months ago
- ☆53Updated 3 years ago
- ☆46Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆41Updated 4 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- scWGCNA☆54Updated 2 years ago