mckennalab / FlashFry
FlashFry: The rapid CRISPR target site characterization tool
☆66Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for FlashFry
- Publication quality NGS track plotting☆108Updated 2 years ago
- Allele-specific alignment sorting☆53Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆107Updated 3 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- Analysis pipeline for the GUIDE-seq assay.☆77Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- ☆53Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆101Updated 4 months ago
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 3 months ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Merging paired-end reads and removing adapters☆45Updated 4 years ago
- A list of alternative splicing analysis resources☆37Updated last week
- Extract 3D contacts (.pairs) from sequencing alignments☆104Updated last month
- Tutorial Website☆53Updated 3 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆105Updated 4 years ago
- HiC uniform processing pipeline☆57Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆35Updated 7 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆79Updated 2 years ago
- Quantification of transposable element expression using RNA-seq☆64Updated 9 months ago
- Check strandedness of RNA-Seq fastq files☆115Updated 2 years ago
- A simple add-in for Excel supplying functions to calculate the reverse, complement, and reverse-complement of a nucleotide sequence☆42Updated 2 years ago
- Galaxy RNA workbench☆39Updated 4 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 4 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆39Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago