Alternatives and similar repositories for RADAR

Users that are interested in RADAR are comparing it to the libraries listed below

• y9c / m6A-SACseq

  View on GitHub
  🧪 Optimized protocol for m6A-SAC-seq
  ☆11Jun 16, 2025Updated 8 months ago
• junjunlab / GetTsite

  View on GitHub
  extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.
  ☆11Jan 24, 2022Updated 4 years ago
• junjunlab / GetTss

  View on GitHub
  extract gene TSS site form gencode/ensembl/gencode database GTF file and export bed format file.
  ☆12Jan 24, 2022Updated 4 years ago
• scottzijiezhang / m6A-seq_analysis_workflow

  View on GitHub
  A pipeline to process m6A-seq data and down stream analysis.
  ☆44Aug 5, 2020Updated 5 years ago
• yuansliu / minirmd

  View on GitHub
  ☆13Feb 14, 2023Updated 3 years ago
• JamesJoly / DGSEA

  View on GitHub
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆14Apr 12, 2023Updated 2 years ago
• shunliubio / easym6A

  View on GitHub
  Process m6A/MeRIP-seq data in a single or batch job mode
  ☆21Apr 28, 2020Updated 5 years ago
• al-mcintyre / merip_reanalysis_scripts

  View on GitHub
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆51Jan 9, 2020Updated 6 years ago
• ZW-xjtlu / exomePeak2

  View on GitHub
  Peak calling and differential methylation for MeRIP-Seq
  ☆34Oct 1, 2024Updated last year
• junjunlab / GetGeneLength

  View on GitHub
  Extract gene length based on featureCount calculation gene nonredundant exon length method.
  ☆19Feb 14, 2022Updated 4 years ago
• lusystemsbio / NetAct

  View on GitHub
  Network construction Algorithm
  ☆22Sep 5, 2024Updated last year
• junjunlab / GetTransTool

  View on GitHub
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆21Mar 25, 2022Updated 3 years ago
• Olaniru / human-fetal-pancreas

  View on GitHub
  analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages
  ☆10Jan 30, 2023Updated 3 years ago
• kundajelab / ENCODE_scatac

  View on GitHub
  ☆12Jan 31, 2023Updated 3 years ago
• XuepengSun / apple_diploid_genomes

  View on GitHub
  ☆10Jun 13, 2020Updated 5 years ago
• XiaLabBioinformatics / m6AMethylation

  View on GitHub
  m(6)A methylation analysis
  ☆10Mar 9, 2019Updated 6 years ago
• veltenlab / PrimerDesign

  View on GitHub
  Package to design primers for MutaSeq and related methods
  ☆11Jan 15, 2021Updated 5 years ago
• xiaowangCN / GeneDMRs

  View on GitHub
  GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …
  ☆10Nov 18, 2023Updated 2 years ago
• canceromics / MeRIPseqPipe

  View on GitHub
  MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  ☆42May 20, 2024Updated last year
• salbrec / seqQscorer

  View on GitHub
  ☆22Sep 17, 2025Updated 5 months ago
• heyuan7676 / ts_eQTLs

  View on GitHub
  Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model
  ☆22Oct 9, 2020Updated 5 years ago
• koelling / amplimap

  View on GitHub
  amplicon/smMIP mapping and analysis pipeline
  ☆11Dec 8, 2022Updated 3 years ago
• ComparativeGenomicsToolkit / mafTools

  View on GitHub
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆11Jul 8, 2025Updated 7 months ago
• reimandlab / ActiveDriverDB

  View on GitHub
  ActiveDriverDB
  ☆12May 1, 2023Updated 2 years ago
• biomed-AI / scAdapt

  View on GitHub
  ☆10Jun 5, 2021Updated 4 years ago
• lcrawlab / recall

  View on GitHub
  Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing
  ☆18Nov 18, 2025Updated 2 months ago
• mqzhanglab / BSDE

  View on GitHub
  A single-cell RNAseq differential expression analysis approach in case-control study
  ☆10Mar 6, 2022Updated 3 years ago
• yupenghe / encode_dna_dynamics

  View on GitHub
  Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"
  ☆11Oct 15, 2020Updated 5 years ago
• shahcompbio / wgs

  View on GitHub
  Whole genome workflows
  ☆12Nov 9, 2024Updated last year
• GeniusTang / Afann

  View on GitHub
  Alignment-Free methods Adjusted by Neural Network
  ☆13Feb 20, 2020Updated 5 years ago
• signaturescience / skater

  View on GitHub
  SKATE R Utilities
  ☆10Jun 19, 2024Updated last year
• Ruitulyu / KAS-Analyzer

  View on GitHub
  New computational framework to process and analyze KAS-seq and spKAS-seq data.
  ☆15Dec 5, 2023Updated 2 years ago
• ClarkLaboratory / IsoVis

  View on GitHub
  IsoVis enables fast and informative visualization of isoform structures and expression levels.
  ☆13Feb 5, 2026Updated last week
• YeoLab / skipper

  View on GitHub
  Skip the peaks and expose RNA-binding in CLIP data
  ☆10Jan 27, 2026Updated 3 weeks ago
• rreybeyb / DeepM6ASeq

  View on GitHub
  a deep-learning-based framework for studying m6A
  ☆21Jul 25, 2024Updated last year
• KramannLab / visium_heart

  View on GitHub
  Spatial transcriptomics of heart tissue
  ☆28Jun 16, 2022Updated 3 years ago
• qm2 / gpress

  View on GitHub
  This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.
  ☆12Oct 5, 2023Updated 2 years ago
• CenterForStatistics-UGent / SPsimSeq

  View on GitHub
  Semi-parametric simulation of bulk and single cell RNA-seq data
  ☆10Nov 17, 2024Updated last year
• amf71 / ECLIPSE

  View on GitHub
  ☆11May 26, 2023Updated 2 years ago