aryeelab / guideseq
Analysis pipeline for the GUIDE-seq assay.
☆78Updated last year
Alternatives and similar repositories for guideseq:
Users that are interested in guideseq are comparing it to the libraries listed below
- Analysis pipeline for the GUIDE-seq assay.☆24Updated this week
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆62Updated 9 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- ☆58Updated 3 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 7 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 3 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆29Updated 3 years ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆74Updated 3 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- ☆57Updated 5 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 5 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆108Updated last month
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- New version of JACUSA -> 2.0☆24Updated this week
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26Updated 4 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated 6 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- ☆68Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago