fritzsedlazeck / SpectreLinks
Copy number caller for long read data including SNV utilization
☆67Updated 5 months ago
Alternatives and similar repositories for Spectre
Users that are interested in Spectre are comparing it to the libraries listed below
Sorting:
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆60Updated this week
- ☆49Updated last year
- Toolkit for calling structural variants using short or long reads☆109Updated last week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- Fast and accurate coordinate conversion between assemblies☆115Updated last week
- Simple pileup-based variant caller☆91Updated 4 months ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated this week
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated last year
- A local-haplotagging-based small and structural variant caller☆80Updated 3 weeks ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆57Updated this week
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 10 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Call select base modifications in PacBio HiFi reads☆14Updated 7 months ago
- ☆81Updated 6 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- A VCF comparison engine for structual variant benchmarking☆23Updated last year
- ☆116Updated 2 weeks ago
- Phased assembly variant caller☆126Updated 9 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Variant annotation and merging pipeline☆39Updated last month
- ☆77Updated 5 years ago
- A battery of methylation tools for PacBio HiFi reads☆41Updated 2 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated 5 months ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 7 months ago
- ☆22Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 6 months ago