fritzsedlazeck / SpectreLinks
Copy number caller for long read data including SNV utilization
☆65Updated 2 months ago
Alternatives and similar repositories for Spectre
Users that are interested in Spectre are comparing it to the libraries listed below
Sorting:
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆54Updated last week
- ☆48Updated 10 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆50Updated this week
- A local-haplotagging-based small and structural variant caller☆78Updated last month
- SRF: Satellite Repeat Finder☆96Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 5 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆80Updated 2 weeks ago
- Error correction of ONT transcript reads☆58Updated last year
- WDL workflows for variant calling and assembly using ONT☆35Updated 3 weeks ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆67Updated last week
- Toolkit for calling structural variants using short or long reads☆105Updated last week
- Simple pileup-based variant caller☆90Updated 2 months ago
- Fast and accurate coordinate conversion between assemblies☆114Updated 3 months ago
- python plotly Circos from VCF☆38Updated last year
- ☆39Updated last year
- ☆41Updated 9 months ago
- Pipeline to convert a haploid assembly into diploid