fritzsedlazeck / SpectreLinks
Copy number caller for long read data including SNV utilization
☆68Updated 9 months ago
Alternatives and similar repositories for Spectre
Users that are interested in Spectre are comparing it to the libraries listed below
Sorting:
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆66Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- Simple pileup-based variant caller☆95Updated 8 months ago
- Toolkit for calling structural variants using short or long reads☆115Updated last month
- ☆52Updated 3 months ago
- A local-haplotagging-based small and structural variant caller☆90Updated 3 weeks ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- Pipeline to convert a haploid assembly into diploid☆109Updated 11 months ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 3 months ago
- vcfdist: Accurately benchmarking phased variant calls☆85Updated 3 months ago
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- ☆78Updated 5 years ago
- SRF: Satellite Repeat Finder☆101Updated 2 years ago
- ☆121Updated last month
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- ☆83Updated 10 months ago
- Phased assembly variant caller☆130Updated last year
- python plotly Circos from VCF☆40Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A program for assessing the T2T genome continuity☆92Updated 3 weeks ago
- ☆101Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated last month
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- Variant annotation and merging pipeline☆41Updated 5 months ago
- A VCF comparison engine for structual variant benchmarking☆23Updated 3 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago