jmonlong / svevalLinks
Functions to compare a SV call sets against a truth set.
☆30Updated 3 months ago
Alternatives and similar repositories for sveval
Users that are interested in sveval are comparing it to the libraries listed below
Sorting:
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 weeks ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- Population-wide Deletion Calling☆35Updated 5 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆12Updated 3 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- ☆21Updated 5 years ago
- Easy genomic regions for short-read variant calling☆44Updated last month
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- Tools for merging Tandem Repeat VCF files☆34Updated 5 months ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- This is the Haplotypo repository☆20Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- ☆31Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 7 months ago