jmonlong / svevalLinks
Functions to compare a SV call sets against a truth set.
☆30Updated 2 months ago
Alternatives and similar repositories for sveval
Users that are interested in sveval are comparing it to the libraries listed below
Sorting:
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Population-wide Deletion Calling☆35Updated 4 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆12Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 4 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- A python wrapper around SURVIVOR☆20Updated last year
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆20Updated 5 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- ☆31Updated 3 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Tools for merging Tandem Repeat VCF files☆33Updated 4 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- ☆21Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago