jmonlong / sveval
Functions to compare a SV call sets against a truth set.
☆28Updated 9 months ago
Alternatives and similar repositories for sveval:
Users that are interested in sveval are comparing it to the libraries listed below
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆12Updated 3 years ago
- Unfazed by genomic variant phasing☆26Updated 8 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- ☆21Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 4 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆11Updated last year
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Kmer Analysis of Pileups for Genotyping☆21Updated last week
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated 3 weeks ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- transposable element typing pipeline☆17Updated 10 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 6 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- This is the Haplotypo repository☆20Updated 8 months ago
- ☆13Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Benchmark structural variant calls against a reference set☆17Updated 3 months ago
- Structural variant (SV) analysis tools☆35Updated 6 months ago