rrazaghi / modbamtoolsLinks
Set of tools to manipulate and visualize modified base bam files
☆58Updated 3 years ago
Alternatives and similar repositories for modbamtools
Users that are interested in modbamtools are comparing it to the libraries listed below
Sorting:
- Copy number caller for long read data including SNV utilization☆68Updated 8 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- ☆83Updated 9 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 9 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆66Updated last month
- Simple pileup-based variant caller☆95Updated 8 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- ☆52Updated 3 months ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 2 months ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- ☆31Updated 2 months ago
- A local-haplotagging-based small and structural variant caller☆90Updated last week
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- python plotly Circos from VCF☆40Updated last year
- ☆78Updated 5 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated 2 weeks ago
- A battery of methylation tools for PacBio HiFi reads☆44Updated 3 weeks ago
- vcfdist: Accurately benchmarking phased variant calls☆85Updated 3 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Pore-C support☆53Updated 2 years ago
- Call select base modifications in PacBio HiFi reads☆15Updated last month