rrazaghi / modbamtoolsLinks
Set of tools to manipulate and visualize modified base bam files
☆57Updated 3 years ago
Alternatives and similar repositories for modbamtools
Users that are interested in modbamtools are comparing it to the libraries listed below
Sorting:
- Copy number caller for long read data including SNV utilization☆68Updated 6 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆63Updated last week
- ☆81Updated 7 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- A battery of methylation tools for PacBio HiFi reads☆43Updated last month
- Variant annotation and merging pipeline☆39Updated 3 months ago
- ☆32Updated 3 weeks ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- ☆50Updated last month
- Simple pileup-based variant caller☆93Updated 6 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- ☆79Updated 5 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated last year
- Fast and accurate coordinate conversion between assemblies☆117Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆27Updated 3 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆44Updated 3 months ago
- ☆22Updated 4 years ago
- Pore-C support☆53Updated 2 years ago
- python plotly Circos from VCF☆40Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆86Updated last week
- Toolkit for calling structural variants using short or long reads☆109Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- ☆30Updated 4 years ago