rrazaghi / modbamtoolsLinks
Set of tools to manipulate and visualize modified base bam files
☆56Updated 3 years ago
Alternatives and similar repositories for modbamtools
Users that are interested in modbamtools are comparing it to the libraries listed below
Sorting:
- Copy number caller for long read data including SNV utilization☆67Updated 6 months ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- ☆81Updated 7 months ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆61Updated 2 weeks ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Simple pileup-based variant caller☆92Updated 5 months ago
- ☆49Updated last week
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- Variant annotation and merging pipeline☆39Updated 2 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆57Updated last week
- Toolkit for calling structural variants using short or long reads☆109Updated last week
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- Fast and accurate coordinate conversion between assemblies☆116Updated 2 weeks ago
- A battery of methylation tools for PacBio HiFi reads☆42Updated last month
- ☆32Updated this week
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 5 months ago
- ☆78Updated 5 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- A program for assessing the T2T genome continuity☆87Updated 2 weeks ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 3 weeks ago
- python plotly Circos from VCF☆39Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 11 months ago