DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
☆509Feb 26, 2026Updated last month
Alternatives and similar repositories for delly
Users that are interested in delly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated last month
- Structural variant and indel caller for mapped sequencing data☆462Oct 11, 2025Updated 6 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆282May 21, 2025Updated 10 months ago
- Structural variation and indel detection by local assembly☆255Mar 17, 2026Updated 3 weeks ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Toolset for SV simulation, comparison and filtering☆415Dec 1, 2023Updated 2 years ago
- Structural variation caller using third generation sequencing☆645Apr 2, 2026Updated last week
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆176Jan 7, 2020Updated 6 years ago
- Annotation and Ranking of Structural Variation☆292Apr 3, 2026Updated last week
- Copy number variant detection from targeted DNA sequencing☆606Updated this week
- Strelka2 germline and somatic small variant caller☆392Dec 29, 2021Updated 4 years ago
- Structural variant toolkit for VCFs☆404Mar 21, 2026Updated 3 weeks ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆234Feb 17, 2022Updated 4 years ago
- Long read based human genomic structural variation detection with cuteSV☆282Mar 26, 2026Updated 2 weeks ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Plot structural variant signals from many BAMs and CRAMs☆563Jul 13, 2024Updated last year
- Structural variant detection and association testing☆108Feb 2, 2023Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆123Oct 9, 2025Updated 6 months ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆212Mar 16, 2026Updated 3 weeks ago
- BAM Statistics, Feature Counting and Annotation☆154Updated this week
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆840Apr 1, 2026Updated last week
- Jasmine: SV Merging Across Samples☆246Dec 20, 2024Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆400Aug 30, 2025Updated 7 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 10 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- VarDict☆203Jan 5, 2024Updated 2 years ago
- Tools for working with SAM/BAM data☆609Dec 22, 2024Updated last year
- Read-based phasing of genomic variants, also called haplotype assembly☆409Dec 31, 2025Updated 3 months ago
- SV detection from paired end reads mapping☆118Jul 31, 2019Updated 6 years ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆865Feb 8, 2026Updated 2 months ago
- Bayesian genotyper for structural variants☆136Mar 6, 2021Updated 5 years ago
- The next version of bwa-mem☆826Oct 15, 2025Updated 5 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆176Aug 22, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A structural variation pipeline for short-read sequencing☆202Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆167Mar 28, 2023Updated 3 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆240Aug 11, 2021Updated 4 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated last month
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆416Mar 13, 2026Updated 3 weeks ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆542Updated this week