dellytools / dellyLinks
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
☆470Updated last month
Alternatives and similar repositories for delly
Users that are interested in delly are comparing it to the libraries listed below
Sorting:
- ☆276Updated 3 months ago
- Count bases in BAM/CRAM files☆317Updated 3 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆241Updated 2 months ago
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 10 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆318Updated last week
- Transcript assembly and quantification for RNA-Seq☆439Updated 3 weeks ago
- C++ API & command-line toolkit for working with BAM data☆424Updated 2 weeks ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆222Updated 3 years ago
- Strelka2 germline and somatic small variant caller☆368Updated 3 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆406Updated last year
- Haplotype VCF comparison tools☆432Updated last year
- Annotation and Ranking of Structural Variation☆257Updated 2 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆253Updated last year
- parallel fastq-dump wrapper☆295Updated 2 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆442Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated last week
- TransDecoder source☆289Updated 8 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆377Updated last year
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆210Updated 5 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated 2 weeks ago
- Toolset for SV simulation, comparison and filtering☆379Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆422Updated last month
- Structural variation caller using third generation sequencing☆593Updated last month
- Read trimming tool for Illumina NGS data.☆136Updated 10 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆266Updated last year
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆387Updated 5 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆366Updated this week
- ☆248Updated last year
- VarDict☆200Updated last year
- Bayesian haplotype-based mutation calling☆311Updated 2 months ago