brentp / dupholdLinks
don't get DUP'ed or DEL'ed by your putative SVs.
☆107Updated 4 years ago
Alternatives and similar repositories for duphold
Users that are interested in duphold are comparing it to the libraries listed below
Sorting:
- Structural Variant Index☆75Updated 11 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Toolkit for calling structural variants using short or long reads☆110Updated last month
- Read visualizer for structural variants☆84Updated 7 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 4 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Data and information about the Polaris study☆54Updated 5 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- BAM Statistics, Feature Counting and Annotation☆151Updated 3 weeks ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆50Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- UCSC Nanopore☆44Updated 6 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- ☆44Updated last year
- TIDDIT - structural variant calling☆77Updated 7 months ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆37Updated 3 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated last month
- ☆83Updated 8 months ago