PapenfussLab / StructuralVariantAnnotation
R package designed to simplify structural variant analysis
☆72Updated 3 years ago
Alternatives and similar repositories for StructuralVariantAnnotation:
Users that are interested in StructuralVariantAnnotation are comparing it to the libraries listed below
- Comprehensive benchmark of structural variant callers☆45Updated 4 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 5 months ago
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 8 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆75Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- Burden testing against public controls☆50Updated 11 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- Tools for the analysis of structural variation in genomes☆78Updated 10 months ago
- ☆39Updated 9 months ago
- ☆78Updated 10 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆46Updated this week
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆146Updated this week
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 6 years ago
- Thousand Variant Callers Project Repository☆71Updated 5 years ago
- Structural Variant Index☆71Updated 2 months ago
- 🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips☆69Updated last month
- R package for inferring copy number from read depth☆32Updated 2 years ago