R package designed to simplify structural variant analysis
☆74Dec 22, 2021Updated 4 years ago
Alternatives and similar repositories for StructuralVariantAnnotation
Users that are interested in StructuralVariantAnnotation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆282May 21, 2025Updated 10 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago
- Jasmine: SV Merging Across Samples☆246Dec 20, 2024Updated last year
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 10 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Structural variant toolkit for VCFs☆404Mar 21, 2026Updated 2 weeks ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- Integrative analysis of structural variations.☆40Dec 20, 2023Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 2 months ago
- Structural variation and indel detection by local assembly☆255Mar 17, 2026Updated 3 weeks ago
- Toolset for SV simulation, comparison and filtering☆415Dec 1, 2023Updated 2 years ago
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- Annotation and Ranking of Structural Variation☆292Apr 3, 2026Updated last week
- ☆51Aug 27, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Bayesian genotyper for structural variants☆136Mar 6, 2021Updated 5 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆123Oct 9, 2025Updated 6 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆563Jul 13, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 11 months ago
- Various algorithms for analysing genomics data☆272Updated this week
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Structural variant detection and association testing☆108Feb 2, 2023Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Feb 14, 2025Updated last year
- Count bases in BAM/CRAM files☆323Jan 31, 2022Updated 4 years ago
- Tools for processing and analyzing structural variants.☆34Sep 8, 2015Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- BAM Statistics, Feature Counting and Annotation☆154Updated this week
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 8 years ago
- Characterization of Germline variants☆100Mar 15, 2022Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year