tobiasrausch / alfred
BAM Statistics, Feature Counting and Annotation
☆149Updated 2 months ago
Alternatives and similar repositories for alfred:
Users that are interested in alfred are comparing it to the libraries listed below
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆109Updated last week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated last week
- FEELnc : FlExible Extraction of LncRNA☆87Updated 7 months ago
- ☆120Updated 5 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- Somatic structural variant caller for long-read data☆65Updated 3 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆101Updated last week
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆68Updated 7 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- WisecondorX — An evolved WISECONDOR☆97Updated 7 months ago
- ☆39Updated last week
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last week
- Tip and tricks for BAM files☆85Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 5 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆144Updated last month
- Dfam Transposable Element Tools Docker container.☆90Updated last month
- A tool for somatic structural variant calling using long reads☆127Updated 2 weeks ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 9 months ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆102Updated this week
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆92Updated 5 months ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆116Updated 4 years ago
- A tool for profiling long STRs from short reads☆97Updated 4 years ago