tobiasrausch / loraxLinks
A long-read analysis toolbox for cancer and population genomics
☆23Updated 4 months ago
Alternatives and similar repositories for lorax
Users that are interested in lorax are comparing it to the libraries listed below
Sorting:
- ☆14Updated last year
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- Tumour-only somatic mutation calling using long reads☆27Updated 7 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- ☆19Updated 2 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆16Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆30Updated this week
- ☆16Updated 5 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- SV calling for diploid assemblies☆27Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Transcript assembly and quantification for RNA-Seq☆8Updated 5 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- ☆31Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 4 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago