lgmgeo / AnnotSVLinks
Annotation and Ranking of Structural Variation
☆260Updated 3 months ago
Alternatives and similar repositories for AnnotSV
Users that are interested in AnnotSV are comparing it to the libraries listed below
Sorting:
- structural variant calling and genotyping with existing tools, but, smoothly.☆253Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated 2 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated 2 years ago
- Structural variant toolkit for VCFs☆361Updated last month
- A structural variation pipeline for short-read sequencing☆188Updated last week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 11 months ago
- Jasmine: SV Merging Across Samples☆216Updated 6 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆229Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆150Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆152Updated 3 months ago
- software tools for haplotype assembly from sequence data☆219Updated 4 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆269Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Structural variation and indel detection by local assembly☆246Updated this week
- A minimap2 frontend for PacBio native data formats☆197Updated 3 months ago
- Genome browser and variant annotation☆310Updated last week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Toolset for SV simulation, comparison and filtering☆384Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- An overview of all nanopack tools☆257Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆280Updated 8 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆224Updated 3 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆161Updated 10 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆203Updated 3 weeks ago
- VarDict☆198Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆252Updated 4 months ago
- Tools for processing and analyzing structural variants.☆152Updated 3 years ago