Annotation and Ranking of Structural Variation
☆310Aug 11, 2026Updated 2 months ago
Alternatives and similar repositories for AnnotSV
Users that are interested in AnnotSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Jasmine: SV Merging Across Samples☆266Dec 20, 2024Updated last year
- Structural variant toolkit for VCFs☆428Oct 3, 2026Updated last month
- Toolset for SV simulation, comparison and filtering☆425Dec 1, 2023Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆76Jun 26, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A simple script to create a customizable html file from an AnnotSV output.☆23Apr 20, 2026Updated 6 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆286May 21, 2025Updated last year
- Structural variation and indel detection by local assembly☆258Aug 19, 2026Updated 2 months ago
- Structural variation caller using third generation sequencing☆686Oct 18, 2026Updated 2 weeks ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆541Updated this week
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆174Mar 25, 2026Updated 7 months ago
- Toolkit for calling structural variants using short or long reads☆120Oct 30, 2026Updated last week
- Read-based phasing of genomic variants, also called haplotype assembly☆433Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Long read based human genomic structural variation detection with cuteSV☆296Oct 12, 2026Updated 3 weeks ago
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated last year
- A structural variation pipeline for short-read sequencing☆210Updated this week
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆879Oct 29, 2026Updated last week
- Phased assembly variant caller☆147Dec 4, 2024Updated last year
- TIDDIT - structural variant calling☆80Jul 20, 2026Updated 3 months ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆218Jun 23, 2026Updated 4 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆127Jul 10, 2026Updated 3 months ago
- A tool for somatic structural variant calling using long reads☆181Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆135Updated this week
- lumpy: a general probabilistic framework for structural variant discovery☆345Feb 22, 2026Updated 8 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆339May 27, 2025Updated last year
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Copy number variant detection from targeted DNA sequencing☆617Oct 15, 2026Updated 3 weeks ago
- genetic variant expressions, annotation, and filtering for great good.☆274May 12, 2026Updated 5 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆42Updated this week
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 8 months ago
- Haplotype VCF comparison tools☆474Dec 7, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆397Updated this week
- A Tool to Annotate and Prioritize Exome Variants☆267Updated this week
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 4 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆579Updated this week
- A genome browser designed for complex structural variants and long reads.☆307Updated this week
- A tool for estimating repeat sizes☆220Jan 30, 2024Updated 2 years ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago