lgmgeo / AnnotSVLinks
Annotation and Ranking of Structural Variation
☆262Updated last week
Alternatives and similar repositories for AnnotSV
Users that are interested in AnnotSV are comparing it to the libraries listed below
Sorting:
- A structural variation pipeline for short-read sequencing☆194Updated this week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆273Updated 4 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆227Updated 3 years ago
- Structural variation and indel detection by local assembly☆246Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆259Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- software tools for haplotype assembly from sequence data☆222Updated 7 months ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆202Updated 3 weeks ago
- VarDict☆198Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆158Updated 2 years ago
- ☆134Updated last month
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆170Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆257Updated last year
- A tool for estimating repeat sizes☆197Updated last year
- Full-Length Alternative Isoform analysis of RNA☆234Updated this week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆158Updated 6 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆241Updated 2 months ago
- Structural variant toolkit for VCFs☆378Updated 2 weeks ago
- Jasmine: SV Merging Across Samples☆225Updated 9 months ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆204Updated 4 years ago
- Toolset for SV simulation, comparison and filtering☆396Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆276Updated 7 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆211Updated 2 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆325Updated 3 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆220Updated 2 months ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 11 months ago
- The nimble & robust variant annotator☆185Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated last year