Annotation and Ranking of Structural Variation
☆300Jun 9, 2026Updated last week
Alternatives and similar repositories for AnnotSV
Users that are interested in AnnotSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variant toolkit for VCFs☆414May 22, 2026Updated 3 weeks ago
- Jasmine: SV Merging Across Samples☆253Dec 20, 2024Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆73Jun 26, 2023Updated 2 years ago
- Toolset for SV simulation, comparison and filtering☆420Dec 1, 2023Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆566Jul 13, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆284May 21, 2025Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆525Updated this week
- A simple script to create a customizable html file from an AnnotSV output.☆21Apr 20, 2026Updated last month
- Tandem repeat expansion detection or genotyping from long-read alignments☆161Mar 25, 2026Updated 2 months ago
- Structural variation caller using third generation sequencing☆663May 18, 2026Updated last month
- Structural variation and indel detection by local assembly☆256Jun 7, 2026Updated last week
- Toolkit for calling structural variants using short or long reads☆115Jun 8, 2026Updated last week
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated last year
- Long read based human genomic structural variation detection with cuteSV☆289Mar 26, 2026Updated 2 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 3 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆418Dec 31, 2025Updated 5 months ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 3 months ago
- A structural variation pipeline for short-read sequencing☆204Updated this week
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆858May 2, 2026Updated last month
- TIDDIT - structural variant calling☆79Mar 22, 2026Updated 2 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆215Mar 16, 2026Updated 3 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆125Oct 9, 2025Updated 8 months ago
- ☆129May 4, 2026Updated last month
- Phased assembly variant caller☆141Dec 4, 2024Updated last year
- diploid SNV caller for error-prone reads☆211Apr 26, 2024Updated 2 years ago
- A tool for estimating repeat sizes☆214Jan 30, 2024Updated 2 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- Haplotype VCF comparison tools☆469Dec 7, 2023Updated 2 years ago
- genetic variant expressions, annotation, and filtering for great good.☆275May 12, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Application of pan-genome for population☆121Oct 26, 2025Updated 7 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆32Feb 10, 2026Updated 4 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆235Feb 17, 2022Updated 4 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆167Feb 26, 2025Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆407May 1, 2026Updated last month
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated 2 months ago
- A tool for somatic structural variant calling using long reads☆172Jun 8, 2026Updated last week