Alternatives and similar repositories for Severus:

Users that are interested in Severus are comparing it to the libraries listed below

• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated last month
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆123Updated this week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆112Updated 2 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 5 months ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆137Updated 2 weeks ago
• twolinin / longphase
  ☆109Updated last week
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆60Updated this week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆138Updated last month
• EichlerLab / pav
  Phased assembly variant caller
  ☆110Updated 3 months ago
• epi2me-labs / wf-transcriptomes
  ☆88Updated 2 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆79Updated last month
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 8 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆207Updated 2 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆96Updated last month
• lh3 / yak
  Yet another k-mer analyzer
  ☆131Updated 11 months ago
• friend1ws / nanomonsv
  SV detection tool for nanopore sequence reads
  ☆89Updated 6 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• marbl / ModDotPlot
  ☆135Updated last week
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆65Updated 7 months ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆105Updated 3 weeks ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆183Updated 7 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆59Updated this week
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆100Updated this week
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆183Updated 9 months ago
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆124Updated 3 months ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆75Updated 9 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆141Updated this week
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆122Updated 7 months ago