Alternatives and similar repositories for Severus:

Users that are interested in Severus are comparing it to the libraries listed below

• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆63Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆113Updated 3 months ago
• epi2me-labs / wf-transcriptomes
  ☆90Updated 3 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆112Updated 4 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 2 weeks ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆209Updated 3 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆80Updated 2 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆115Updated this week
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆142Updated last month
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆127Updated this week
• twolinin / longphase
  ☆110Updated last month
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆147Updated this week
• epi2me-labs / modbam2bed
  ☆47Updated 7 months ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆108Updated last month
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 9 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆102Updated this week
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆65Updated 8 months ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆105Updated 9 months ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• mortazavilab / TranscriptClean
  Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
  ☆70Updated last year
• marbl / ModDotPlot
  ☆142Updated 2 weeks ago
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆59Updated 2 weeks ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆145Updated last week
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆101Updated 2 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆90Updated last month
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆184Updated 10 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆184Updated last week
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆148Updated last month