A tool for somatic structural variant calling using long reads
☆173Jun 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for Severus
Users that are interested in Severus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Somatic structural variant caller for long-read data☆92Jun 18, 2026Updated 2 weeks ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆80Jun 18, 2026Updated 2 weeks ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆92May 11, 2026Updated last month
- ☆30Mar 1, 2026Updated 4 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- Tumour-only somatic mutation calling using long reads☆29Oct 28, 2024Updated last year
- Jasmine: SV Merging Across Samples☆255Dec 20, 2024Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆125Oct 9, 2025Updated 8 months ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆110Updated this week
- Structural variant toolkit for VCFs☆417May 22, 2026Updated last month
- Structural variation caller using third generation sequencing☆666Jun 24, 2026Updated last week
- A complete diploid human genome☆152Jun 23, 2026Updated last week
- vcfdist: Accurately benchmarking phased variant calls☆87Feb 23, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆378Jun 25, 2026Updated last week
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated 3 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆418Dec 31, 2025Updated 6 months ago
- ☆129Jun 25, 2026Updated last week
- Toolkit for calling structural variants using short or long reads☆115Jun 15, 2026Updated 2 weeks ago
- Set of tools to manipulate and visualize modified base bam files☆62Aug 2, 2022Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 8 months ago
- Long read based human genomic structural variation detection with cuteSV☆290Mar 26, 2026Updated 3 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆40May 19, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆101Apr 22, 2024Updated 2 years ago
- ☆171Jan 22, 2026Updated 5 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆105Jun 25, 2026Updated last week
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 4 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆162Mar 25, 2026Updated 3 months ago
- bioinformatics toolkit in rust☆107May 14, 2026Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆186Updated this week
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- Evaluating genome assemblies☆122Mar 3, 2026Updated 4 months ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- ☆85Mar 3, 2025Updated last year
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 9 months ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆92Jun 26, 2026Updated last week