Alternatives and similar repositories for Severus

Users that are interested in Severus are comparing it to the libraries listed below

• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 2 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆118Updated last month
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 2 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆129Updated 2 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆216Updated 6 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆113Updated last month
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆152Updated 4 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆119Updated 6 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆114Updated 3 months ago
• twolinin / longphase
  ☆112Updated last month
• epi2me-labs / wf-transcriptomes
  ☆95Updated this week
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆85Updated 4 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆114Updated this week
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆154Updated this week
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆69Updated 2 weeks ago
• friend1ws / nanomonsv
  SV detection tool for nanopore sequence reads
  ☆92Updated 2 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆105Updated last week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆152Updated 2 weeks ago
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆74Updated 11 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆185Updated last year
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆129Updated 10 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆100Updated 3 weeks ago
• marbl / ModDotPlot
  ☆148Updated last month
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆190Updated 3 weeks ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆113Updated 2 weeks ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆152Updated 2 years ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆172Updated 3 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆78Updated last year
• epi2me-labs / modbam2bed
  ☆48Updated 10 months ago