SciLifeLab / TIDDIT
TIDDIT - structural variant calling
☆73Updated 2 weeks ago
Alternatives and similar repositories for TIDDIT:
Users that are interested in TIDDIT are comparing it to the libraries listed below
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated last month
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated this week
- Somatic structural variant caller for long-read data☆65Updated 3 weeks ago
- Detection of CNVs (deletion/duplication) in target panel based NGS data☆16Updated last year
- ☆39Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆26Updated this week
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- ☆39Updated 7 months ago
- Structural Variant Index☆72Updated 4 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆68Updated 7 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆28Updated this week
- Set of tools to manipulate and visualize modified base bam files☆54Updated 2 years ago
- Human reference genome analysis sets☆52Updated last year
- for visual evaluation of read support for structural variation☆52Updated 10 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆62Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated 9 months ago
- Filter SAM file for soft and hard clipped alignments☆46Updated 10 months ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated this week
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Variant Interpretation Pipeline☆25Updated this week
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- QDNAseq package for Bioconductor☆50Updated 8 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago