tobiasrausch / vcLinks
A tutorial on structural variant calling for short read sequencing data
☆38Updated 8 months ago
Alternatives and similar repositories for vc
Users that are interested in vc are comparing it to the libraries listed below
Sorting:
- Structural variant merging tool☆52Updated 10 months ago
- Error correction of ONT transcript reads☆58Updated last year
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆35Updated 3 weeks ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆28Updated last month
- ☆41Updated 9 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- perSVade: personalized Structural Variation detection☆39Updated 4 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- ☆41Updated 4 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- ☆19Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆32Updated this week
- A Nextflow workflow to generate lift over files for any pair of genomes☆67Updated last week
- Human reference genome analysis sets☆53Updated 2 years ago
- ☆51Updated 5 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated 3 weeks ago
- ☆30Updated 10 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- new repo☆28Updated 4 years ago
- ☆28Updated last month