tobiasrausch / vc
A tutorial on structural variant calling for short read sequencing data
☆32Updated 6 months ago
Alternatives and similar repositories for vc:
Users that are interested in vc are comparing it to the libraries listed below
- Structural variant merging tool☆49Updated 8 months ago
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 10 months ago
- ☆27Updated 2 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- perSVade: personalized Structural Variation detection☆39Updated 2 months ago
- ☆30Updated 8 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Variant annotation and merging pipeline☆33Updated last month
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆49Updated 6 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Structural variant caller☆54Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆28Updated 2 years ago
- ☆48Updated 10 months ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 3 years ago
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆39Updated 2 months ago
- Set of tools to manipulate and visualize modified base bam files☆54Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago