Structural variant (SV) analysis tools
☆41Jul 1, 2024Updated last year
Alternatives and similar repositories for svpack
Users that are interested in svpack are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆33Aug 18, 2025Updated 8 months ago
- Jasmine: SV Merging Across Samples☆251Dec 20, 2024Updated last year
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Apr 17, 2026Updated 2 weeks ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- A nextflow pipeline for calling exome CNVs☆14Feb 24, 2026Updated 2 months ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 2 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆37Oct 14, 2025Updated 6 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆166Feb 26, 2025Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆31Jun 18, 2025Updated 10 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated last month
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Toolkit for calling structural variants using short or long reads☆115Apr 28, 2026Updated last week
- vembrane filters VCF records using python expressions☆70Apr 13, 2026Updated 3 weeks ago
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 5 months ago
- Population-wide Deletion Calling☆35Apr 16, 2025Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- ☆14Sep 11, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- Structural variant toolkit for VCFs☆407Mar 21, 2026Updated last month
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 2 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated last month
- Detecting genome structural variants with deep learning in single molecule sequencing☆115Apr 9, 2025Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆124Oct 9, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆44Sep 10, 2024Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 10 months ago
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated 3 weeks ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago