lynxoid / nimbliner
nimble aligner that will map your reads to the references on a laptop
☆12Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for nimbliner
- split a FASTA sequence file into shorter sequences☆10Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 4 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 4 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated 8 months ago
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago
- ☆11Updated last year
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 2 years ago
- ☆14Updated 8 years ago
- ☆14Updated 4 years ago
- Population genetics analysis on VG☆16Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- ☆22Updated 2 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 4 years ago
- De novo genome assembler.☆11Updated 6 years ago
- comb aligner -- a graphical nucleotide sequence alignment tool☆9Updated 8 years ago
- Utilities to detect and profile `het-kmers`☆11Updated 3 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated 11 months ago
- ☆25Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated 10 months ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year