lynxoid / nimblinerLinks
nimble aligner that will map your reads to the references on a laptop
☆12Updated 8 years ago
Alternatives and similar repositories for nimbliner
Users that are interested in nimbliner are comparing it to the libraries listed below
Sorting:
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- ☆25Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆11Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- ☆14Updated 5 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- ☆25Updated 4 years ago
- Utilities to detect and profile `het-kmers`☆11Updated last year
- ☆12Updated 3 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- ☆14Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- MEM mapper prototype☆13Updated 4 years ago
- Pan gGnome Viewer☆10Updated 3 weeks ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- Variant call adjudication☆16Updated last year
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- comb aligner -- a graphical nucleotide sequence alignment tool☆9Updated 8 years ago
- mreps: software for tandem repeat identification in DNA☆14Updated 5 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 5 years ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year