timoast / sintoLinks
Tools for single-cell data processing
☆126Updated last year
Alternatives and similar repositories for sinto
Users that are interested in sinto are comparing it to the libraries listed below
Sorting:
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- ☆109Updated last year
- ☆70Updated 2 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆146Updated last year
- chromatin Variability Across Regions (of the genome!)☆180Updated last year
- Detect doublets in single-cell RNA-seq data☆85Updated 6 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 7 months ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆63Updated 2 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- CUT&RUN and CUT&Tag data processing and analysis☆110Updated 5 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆115Updated 3 months ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- R package to access DoRothEA's regulons☆149Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆91Updated this week
- Single Cell Analysis of Five'Ends☆50Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆141Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆95Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆164Updated last year
- R package for Pathway RespOnsive GENe activity inference☆107Updated 2 years ago
- SNV calling from single cell sequencing☆105Updated 9 months ago
- ☆78Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆120Updated last month