Tools for single-cell data processing
☆137May 27, 2024Updated 2 years ago
Alternatives and similar repositories for sinto
Users that are interested in sinto are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R toolkit for the analysis of single-cell chromatin data☆423Jul 2, 2026Updated 2 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆461Feb 18, 2025Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆77Feb 27, 2023Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- URD - Reconstruction of Branching Developmental Trajectories☆128Jun 29, 2021Updated 5 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- Bead-based single-cell atac processing☆33Jul 6, 2026Updated 2 weeks ago
- ☆59Mar 18, 2026Updated 4 months ago
- Batch balanced KNN☆179Oct 11, 2023Updated 2 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆406Jun 16, 2026Updated last month
- Single-cell Transcriptome and Regulome Analysis Pipeline☆312Mar 6, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆84Jun 9, 2022Updated 4 years ago
- chromatin Variability Across Regions (of the genome!)☆192May 1, 2026Updated 2 months ago
- R/Bioconductor package for working with 10x scATACseq data☆42Nov 13, 2023Updated 2 years ago
- Interfaces for HDF5-based Single Cell File Formats☆178Nov 4, 2023Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆177Jan 26, 2024Updated 2 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆151Dec 5, 2024Updated last year
- Single Cell Analysis of Five'Ends☆53Mar 19, 2024Updated 2 years ago
- ☆48Apr 18, 2020Updated 6 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆342Apr 23, 2024Updated 2 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆665Jun 5, 2026Updated last month
- mgatk: mitochondrial genome analysis toolkit☆115Jul 8, 2026Updated last week
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 9 months ago
- Doublet detection in single-cell RNA-seq data.☆98Feb 6, 2025Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆150May 22, 2026Updated last month
- Publication Page for Satpathy*, Granja* et al 2019☆96Apr 29, 2020Updated 6 years ago
- AUCell: score single cells with gene regulatory networks☆199Mar 9, 2024Updated 2 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆90Dec 4, 2025Updated 7 months ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 3 years ago
- ☆298Jun 16, 2026Updated last month
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Mar 15, 2023Updated 3 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- Collections of library structure and sequence of popular single cell genomic methods☆503Apr 16, 2026Updated 3 months ago