Alternatives and similar repositories for MAST

Users that are interested in MAST are comparing it to the libraries listed below

• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆197Updated 3 weeks ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆195Updated last year
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆297Updated 3 years ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆209Updated last week
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆239Updated 2 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆234Updated 2 years ago
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆190Updated 2 years ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆168Updated last year
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆275Updated last year
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆232Updated this week
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆243Updated 6 months ago
• navinlabcode / copykat
  ☆255Updated last month
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆310Updated last year
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆298Updated 3 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆204Updated last year
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆215Updated last year
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆214Updated 3 weeks ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• neurorestore / Libra
  ☆177Updated 6 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated last month
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆167Updated 2 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆224Updated last year
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• statOmics / tradeSeq
  TRAjectory-based Differential Expression analysis for SEQuencing data
  ☆283Updated 4 months ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆190Updated this week
• czbiohub-sf / tabula-muris
  Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
  ☆194Updated 2 years ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆211Updated 3 months ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆131Updated last year
• rcastelo / GSVA
  Gene set variation analysis
  ☆230Updated this week
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆193Updated last month