10XGenomics / spacerangerLinks
☆19Updated 5 months ago
Alternatives and similar repositories for spaceranger
Users that are interested in spaceranger are comparing it to the libraries listed below
Sorting:
- ☆22Updated 4 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated last year
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- Genomic coordinates of problematic genomic regions as GRanges☆49Updated last month
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆53Updated last year
- Scripts for using scanpy☆38Updated 2 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 7 months ago
- scSNV Mapping tool for 10X Single Cell Data☆25Updated 3 weeks ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆56Updated 4 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- A rust framework to make using alevin-fry even simpler☆60Updated 8 months ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 7 months ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆91Updated 9 months ago
- Convert 10x BAM files to the original FASTQs compatible with 10x pipelines☆66Updated last week
- Builds a PEP from SRA or GEO accessions☆54Updated last month
- Count HLA alleles in single-cell RNA-seq data☆62Updated 4 years ago
- Tools for correcting single cell barcodes for various scATAC-seq techniques and creating fragment files and spltting BAM files per cluste…☆29Updated 3 weeks ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 3 years ago
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 8 months ago
- ☆59Updated last year
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆19Updated 7 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated 3 weeks ago