Batch balanced KNN
☆178Oct 11, 2023Updated 2 years ago
Alternatives and similar repositories for bbknn
Users that are interested in bbknn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 9 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Dec 1, 2025Updated 5 months ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆266Apr 21, 2026Updated last week
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆76Jan 9, 2023Updated 3 years ago
- muon is a multimodal omics Python framework☆266Mar 16, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast, sensitive and accurate integration of single-cell data with Harmony☆642Apr 21, 2026Updated last week
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 6 months ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,607Apr 24, 2026Updated last week
- RNA velocity estimation in Python☆175Oct 7, 2025Updated 6 months ago
- Single cell perturbation prediction☆342Dec 5, 2024Updated last year
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 3 years ago
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated last month
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,432Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 4 months ago
- RNA Velocity generalized through dynamical modeling☆497Feb 25, 2026Updated 2 months ago
- Single-Cell Clustering Assessment Framework☆110Oct 27, 2023Updated 2 years ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆600Jun 26, 2025Updated 10 months ago
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 2 months ago
- Bench-marking classification tools for scRNA-seq data☆196Jun 9, 2022Updated 3 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆122Apr 20, 2026Updated last week
- Deep count autoencoder for denoising scRNA-seq data☆271Mar 21, 2024Updated 2 years ago
- A tool for semi-automatic cell type classification☆473Mar 21, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆239May 23, 2020Updated 5 years ago
- CellRank: dynamics from multi-view single-cell data☆443Apr 24, 2026Updated last week
- software to detect doublets☆98Dec 28, 2024Updated last year
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆175Dec 8, 2022Updated 3 years ago
- Tools for single-cell data processing☆135May 27, 2024Updated last year
- R package for robust clustering of single cell RNA sequencing data☆36Mar 25, 2024Updated 2 years ago
- Convert between AnnData and SingleCellExperiment☆149Updated this week
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Jul 25, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- ☆21Aug 30, 2018Updated 7 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆381Oct 3, 2024Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆428Feb 4, 2026Updated 2 months ago
- Tools and methods for analysis of single cell assay data in R☆262Oct 17, 2025Updated 6 months ago