Teichlab / bbknnLinks
Batch balanced KNN
☆172Updated 2 years ago
Alternatives and similar repositories for bbknn
Users that are interested in bbknn are comparing it to the libraries listed below
Sorting:
- Episcanpy: Epigenomics Single Cell Analysis in Python☆147Updated 10 months ago
- data and model repository for single-cell data☆135Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆168Updated 7 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆142Updated 2 years ago
- Test genes for Spatial Variation☆175Updated last year
- ☆131Updated last year
- Python package to perform enrichment analysis from omics data.☆229Updated last week
- A Bayesian model for compositional single-cell data analysis☆177Updated 2 years ago
- Scanpy use cases.☆87Updated 5 years ago
- R package to access DoRothEA's regulons☆151Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆168Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆159Updated last month
- Single-Cell Clustering Assessment Framework☆105Updated 2 years ago
- Convert between AnnData and SingleCellExperiment☆142Updated last week
- Tabula Muris Senis☆107Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 2 weeks ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆174Updated last week
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆175Updated last year
- Detect doublets in single-cell RNA-seq data☆157Updated 4 years ago
- SingleCellNet: classify single cells across species and platforms☆139Updated 2 years ago
- Differential expression analysis for single-cell RNA-seq data.☆204Updated last week
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆133Updated last year
- Clonotype Neighbor Graph Analysis☆92Updated 2 months ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆216Updated 2 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆229Updated 5 years ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆78Updated 9 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆215Updated last year
- muon is a multimodal omics Python framework☆252Updated this week