Irrationone / cellassignLinks
Automated, probabilistic assignment of cell types in scRNA-seq data
☆202Updated 2 years ago
Alternatives and similar repositories for cellassign
Users that are interested in cellassign are comparing it to the libraries listed below
Sorting:
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆165Updated last year
- Clustering scRNAseq by genotypes☆187Updated 8 months ago
- chromatin Variability Across Regions (of the genome!)☆178Updated last year
- SingleCellNet: classify single cells across species and platforms☆138Updated last year
- Cell types enrichment analysis☆198Updated last year
- AUCell: score single cells with gene regulatory networks☆160Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆192Updated 2 years ago
- Interactively analyze single cell genomic data☆182Updated 2 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆213Updated last year
- R package to access DoRothEA's regulons☆149Updated last year
- A Bayesian model for compositional single-cell data analysis☆172Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- Automated cell type classification☆111Updated 7 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Clone of the Bioconductor repository for the SingleR package.☆192Updated 3 weeks ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- Conversion between scRNA-seq objects☆180Updated last month
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆234Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆131Updated 9 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆156Updated last week
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆113Updated 9 months ago
- Scaling Single Cell Analysis to Millions of Cells☆220Updated last week
- scDIOR: Single cell data IO softwaRe☆144Updated 3 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆171Updated last year
- Haplotype-aware CNV analysis from single-cell RNA-seq☆190Updated 2 weeks ago
- Simple simulation of single-cell RNA sequencing data☆228Updated 3 weeks ago
- Bench-marking classification tools for scRNA-seq data☆186Updated 3 years ago
- Multi-subject Single Cell Deconvolution☆266Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆195Updated 2 months ago