Automated, probabilistic assignment of cell types in scRNA-seq data
☆213Jan 9, 2023Updated 3 years ago
Alternatives and similar repositories for cellassign
Users that are interested in cellassign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated last year
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆224Updated this week
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 2 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆643Apr 21, 2026Updated last week
- A tool for unsupervised projection of single cell RNA-seq data☆99Nov 24, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆335Jul 28, 2020Updated 5 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆240May 8, 2023Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 2 months ago
- ConsensusTME Gene Sets and R Script☆40Jun 6, 2024Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆177Jun 10, 2024Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆227Updated this week
- R package for integrating and analyzing multiple single-cell datasets☆428Feb 4, 2026Updated 2 months ago
- Automated cell type classification☆116Jan 3, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆328Apr 23, 2024Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 10 months ago
- Methods for detecting doublets in single-cell sequencing data☆246Feb 12, 2026Updated 2 months ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆68Jul 8, 2023Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆323Nov 1, 2022Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆239May 23, 2020Updated 5 years ago
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 9 months ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 4 years ago
- Bench-marking classification tools for scRNA-seq data☆196Jun 9, 2022Updated 3 years ago
- CellRank: dynamics from multi-view single-cell data☆443Apr 24, 2026Updated last week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆428Apr 23, 2026Updated last week
- Inferring CNV from Single-Cell RNA-Seq☆663Nov 14, 2025Updated 5 months ago
- scPred package for cell type prediction from scRNA-seq data☆100Jan 18, 2024Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆545Mar 21, 2025Updated last year
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NicheNet: predict active ligand-target links between interacting cells☆639Nov 12, 2025Updated 5 months ago
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 3 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆98Nov 30, 2023Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆256Jan 10, 2026Updated 3 months ago
- Easy single cell analysis platform for enrichment☆223Apr 3, 2026Updated 3 weeks ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago