liulab-dfci / MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline
☆279Updated last year
Alternatives and similar repositories for MAESTRO:
Users that are interested in MAESTRO are comparing it to the libraries listed below
- Analysis Pipeline for Single Cell ATAC-seq☆311Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆264Updated 2 years ago
- my notes for scATACseq analysis☆120Updated 9 months ago
- ☆253Updated 3 months ago
- A tool for detecting somatic variants in single cell data☆189Updated 5 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆282Updated 4 years ago
- ☆225Updated 7 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆263Updated 4 months ago
- Single cell RNA sequencing analysis course☆202Updated 4 months ago
- Analysis of single cell RNA-seq data course☆130Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆263Updated 3 months ago
- TCR and BCR assembly from RNA-seq data☆294Updated this week
- Cell types enrichment analysis☆191Updated 8 months ago
- R package for integrating and analyzing multiple single-cell datasets☆402Updated last month
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆208Updated 3 weeks ago
- Clone of the Bioconductor repository for the SingleR package.☆182Updated this week
- A package to help convert different single-cell data formats to each other☆406Updated 11 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆223Updated last year
- A toolkit for single-cell immune profiling☆325Updated last week
- Table of software for the analysis of single-cell RNA-seq data.☆313Updated this week
- ☆353Updated 3 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆306Updated 7 months ago
- Clustering scRNAseq by genotypes☆175Updated 3 months ago
- NicheNet: predict active ligand-target links between interacting cells☆513Updated this week
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆190Updated last year
- T/B cell receptor sequencing analysis notes☆218Updated 2 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆149Updated 2 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆220Updated 2 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆242Updated 2 weeks ago