liulab-dfci / MAESTROLinks
Single-cell Transcriptome and Regulome Analysis Pipeline
☆285Updated 2 years ago
Alternatives and similar repositories for MAESTRO
Users that are interested in MAESTRO are comparing it to the libraries listed below
Sorting:
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- Single cell RNA sequencing analysis course☆220Updated 3 months ago
- ☆247Updated last year
- my notes for scATACseq analysis☆128Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆300Updated 5 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆289Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆211Updated 10 months ago
- Cell types enrichment analysis☆198Updated last year
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆234Updated last month
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆217Updated last month
- TCR and BCR assembly from RNA-seq data☆320Updated 3 weeks ago
- ☆271Updated 8 months ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- ☆356Updated 3 years ago
- Interpretation of cell states using reference single-cell maps☆284Updated 2 months ago
- Bench-marking classification tools for scRNA-seq data☆186Updated 3 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆192Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆434Updated last year
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆281Updated last year
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆162Updated 2 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆183Updated 4 years ago
- Single RNA-seq data analysis with R (Finland, May, 2019)☆226Updated 3 years ago
- Analysis of single cell RNA-seq data course☆142Updated 2 years ago
- Tutorial for scRNA-seq data analysis beginners using R☆210Updated 5 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆291Updated 3 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆417Updated last week
- Clone of the Bioconductor repository for the SingleR package.☆192Updated 3 weeks ago
- chromatin Variability Across Regions (of the genome!)☆178Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆231Updated 6 months ago