liulab-dfci / MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline
☆278Updated 2 years ago
Alternatives and similar repositories for MAESTRO:
Users that are interested in MAESTRO are comparing it to the libraries listed below
- Analysis Pipeline for Single Cell ATAC-seq☆313Updated last year
- ☆226Updated 8 months ago
- my notes for scATACseq analysis☆122Updated 10 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆265Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆192Updated 5 months ago
- Single cell RNA sequencing analysis course☆204Updated last week
- ☆255Updated 4 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆190Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆286Updated 4 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆208Updated last month
- Clone of the Bioconductor repository for the SingleR package.☆184Updated 3 weeks ago
- Cell types enrichment analysis☆194Updated 9 months ago
- Analysis of single cell RNA-seq data course☆131Updated 2 years ago
- TCR and BCR assembly from RNA-seq data☆298Updated 3 weeks ago
- ☆353Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆225Updated last year
- Interpretation of cell states using reference single-cell maps☆268Updated last week
- A package to help convert different single-cell data formats to each other☆409Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆244Updated this week
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆151Updated 2 years ago
- Benchmarking computational single cell ATAC-seq methods☆180Updated 4 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆267Updated 5 months ago
- Scissor package☆208Updated 10 months ago
- NicheNet: predict active ligand-target links between interacting cells☆515Updated 2 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆310Updated 7 months ago
- A toolkit for single-cell immune profiling☆327Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆406Updated last month
- Bench-marking classification tools for scRNA-seq data☆184Updated 2 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago