Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSCAn
☆12Mar 22, 2024Updated 2 years ago
Alternatives and similar repositories for scbs
Users that are interested in scbs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package with CLI for the analysis of single cell methylation data.☆20Oct 29, 2024Updated last year
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆24Jan 26, 2024Updated 2 years ago
- Bayesian Clustering and Imputation of Single Cell Methylomes☆15Jul 16, 2020Updated 5 years ago
- ☆10Mar 11, 2025Updated last year
- single-cell Nucleosome Methylation Transcription☆14Mar 5, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆27Feb 4, 2023Updated 3 years ago
- Snakemake profile for the (Sun) Grid Engine queueing system☆17Jul 13, 2023Updated 2 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Nov 16, 2020Updated 5 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- Transcription Factor Co-Occurrence using Market Basket analysis☆17Jul 7, 2025Updated 8 months ago
- ☆55Aug 1, 2024Updated last year
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes☆21Nov 13, 2025Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14May 12, 2023Updated 2 years ago
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆33Jan 29, 2026Updated last month
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆15Aug 20, 2021Updated 4 years ago
- ☆16May 23, 2022Updated 3 years ago
- The scripts used for analyzing JAX mouse dataset☆26Oct 24, 2024Updated last year
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆20May 14, 2020Updated 5 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Gene regulatory network inference for RNA velocity and pseudotime data☆29Nov 6, 2025Updated 4 months ago
- GitHub Actions for developing and maintaining Bioconductor packages☆13Nov 13, 2025Updated 4 months ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆31Mar 28, 2019Updated 6 years ago
- Easy & Pretrained SOTA Deep Learning for RNA strings☆12Apr 15, 2022Updated 3 years ago
- Tools for single-cell data processing☆132May 27, 2024Updated last year
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆41Mar 10, 2024Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Feb 21, 2024Updated 2 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20May 14, 2021Updated 4 years ago
- Toolkit for single-cell DNA methylation analysis.☆46Mar 16, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 3 months ago
- ☆18Oct 4, 2022Updated 3 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated 2 months ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- R package with motifs for use with chromVAR☆29Nov 17, 2017Updated 8 years ago
- The Agentic BioML Challenge + AutoBioML framework☆18Jun 3, 2025Updated 9 months ago