LKremer / scbsLinks
Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSCAn
☆11Updated last year
Alternatives and similar repositories for scbs
Users that are interested in scbs are comparing it to the libraries listed below
Sorting:
- ☆12Updated 4 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆12Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 4 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆23Updated 2 months ago
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆20Updated last year
- python API to the CoGAPS NMF package☆19Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆18Updated 2 years ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆22Updated 2 months ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆12Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- Gene Expression Decomposition and Integration☆18Updated 4 months ago
- The scripts used for the analyses in TOME project☆24Updated 7 months ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆12Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 8 months ago
- ☆29Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- ☆49Updated 11 months ago
- ☆16Updated last year
- single-cell Nucleosome Methylation Transcription☆13Updated 7 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ☆12Updated 5 years ago
- ☆15Updated 3 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year