seasoncloud / AlleloscopeLinks
Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows for the more accurate delineation of copy number states and the detection of subclonal copy-neutral loss-of-heterozygosity and mirrored CNA events. On…
☆30Updated 2 years ago
Alternatives and similar repositories for Alleloscope
Users that are interested in Alleloscope are comparing it to the libraries listed below
Sorting:
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆58Updated last year
- ☆51Updated last year
- ☆34Updated 6 years ago
- ☆47Updated 9 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- ☆32Updated 9 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- scWGCNA☆61Updated 2 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Clone identification from single-cell data☆61Updated 2 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last month
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆34Updated 6 years ago
- ☆23Updated last year
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago