mojaveazure / loomRLinks
An R-based interface for loom files
☆66Updated 4 years ago
Alternatives and similar repositories for loomR
Users that are interested in loomR are comparing it to the libraries listed below
Sorting:
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- Normalize CITEseq Data☆65Updated 2 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- ☆55Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆59Updated last week
- Linear trajectory inference for single-cell RNA-seq☆59Updated last year
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year
- ☆37Updated 8 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Mouse cell atlas☆59Updated 5 years ago
- ☆41Updated 4 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Updated 8 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 5 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Cell type pipes for R☆51Updated last year
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆111Updated last month
- ☆54Updated 3 months ago
- ☆50Updated 7 years ago