mojaveazure / loomR
An R-based interface for loom files
☆66Updated 4 years ago
Alternatives and similar repositories for loomR:
Users that are interested in loomR are comparing it to the libraries listed below
- ☆54Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆57Updated 4 months ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 7 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆48Updated 3 years ago
- Normalize CITEseq Data☆65Updated 2 weeks ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Linear trajectory inference for single-cell RNA-seq☆59Updated last year
- ☆41Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 7 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Cell type pipes for R☆51Updated last year
- ☆37Updated 8 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆109Updated this week
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆81Updated 7 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Toolkit for Single-Cell Velocity☆55Updated 3 months ago
- ☆53Updated 2 months ago
- ☆46Updated 2 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- Explore and share your scRNAseq clustering results☆50Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 4 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆75Updated last year