ProSolo / prosoloLinks
ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
☆22Updated 3 years ago
Alternatives and similar repositories for prosolo
Users that are interested in prosolo are comparing it to the libraries listed below
Sorting:
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆13Updated 5 years ago
- Bedfile perturbation tool☆17Updated last year
- ☆12Updated 2 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 4 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆24Updated 3 weeks ago
- FREE Divergence Error-Correcting DNA Barcodes☆9Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- ☆9Updated 3 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 3 weeks ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Visualization tool for temporal clonal evolution.☆17Updated 5 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- ☆14Updated 2 years ago
- ☆12Updated last year
- maze: match visualizer☆9Updated 3 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated 10 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago