ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
☆21Sep 1, 2021Updated 4 years ago
Alternatives and similar repositories for prosolo
Users that are interested in prosolo are comparing it to the libraries listed below
Sorting:
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- PGR-TK: Pangenome Research Tool Kit☆22Mar 13, 2025Updated last year
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆13Feb 29, 2020Updated 6 years ago
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- ☆12Jul 4, 2022Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Sep 2, 2025Updated 6 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- RNA editing tests☆17Sep 24, 2020Updated 5 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- RNA editing quantification in deep transcriptome data☆16Jul 17, 2025Updated 8 months ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 7 months ago
- k-mer similarity analysis pipeline☆22Nov 20, 2025Updated 4 months ago
- ☆25Dec 18, 2024Updated last year
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- ☆16Jan 15, 2025Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆61Feb 25, 2026Updated 3 weeks ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆134Updated this week
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 2 years ago
- RNA-Seq Mutation Detection☆28Mar 3, 2026Updated 2 weeks ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Shell bootloader for data science.☆12Mar 9, 2026Updated last week
- Full-length transcriptome splicing and mutation analysis☆87Jun 24, 2024Updated last year
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 4 months ago