A Shiny web app for mapping datasets using Seurat v4
☆151May 22, 2026Updated 3 months ago
Alternatives and similar repositories for azimuth
Users that are interested in azimuth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆28May 16, 2025Updated last year
- Community-provided extensions to Seurat☆371Jun 29, 2026Updated 2 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆267Jan 10, 2026Updated 7 months ago
- Interfaces for HDF5-based Single Cell File Formats☆177Nov 4, 2023Updated 2 years ago
- Dataset distribution for Seurat☆159Mar 6, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Methods for detecting doublets in single-cell sequencing data☆264Aug 31, 2026Updated last week
- ☆25Jul 9, 2025Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆419Updated this week
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆165Jun 23, 2026Updated 2 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆670Jun 5, 2026Updated 3 months ago
- Shiny Interactive Web Apps for Single-Cell Data☆217Apr 24, 2025Updated last year
- A Bayesian model for compositional single-cell data analysis☆200Jan 13, 2026Updated 7 months ago
- R toolkit for single cell genomics☆2,795Updated this week
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆27Jun 1, 2023Updated 3 years ago
- Clone of the Bioconductor repository for the SingleR package.☆204Aug 28, 2026Updated last week
- ☆467May 26, 2026Updated 3 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆342Nov 1, 2022Updated 3 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆562Mar 21, 2025Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆248Aug 7, 2024Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆42Nov 18, 2021Updated 4 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆187Jun 24, 2021Updated 5 years ago
- AUCell: score single cells with gene regulatory networks☆202Mar 9, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Easy single cell analysis platform for enrichment☆231Aug 9, 2026Updated 3 weeks ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆311Jun 17, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated 2 weeks ago
- Gene set scoring for single-cell data☆207Apr 29, 2026Updated 4 months ago
- Gene set variation analysis☆248Aug 4, 2026Updated last month
- R toolkit for the analysis of single-cell chromatin data☆425Updated this week
- A tool for semi-automatic cell type classification☆502May 22, 2026Updated 3 months ago
- software to detect doublets☆98Dec 28, 2024Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆347Jul 28, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scPred package for cell type prediction from scRNA-seq data☆106Jan 18, 2024Updated 2 years ago
- Scaling Single Cell Analysis to Millions of Cells☆303Jul 13, 2026Updated last month
- Detect doublets in single-cell RNA-seq data☆179Dec 29, 2020Updated 5 years ago
- Convert Seurat objects to 10x Genomics Loupe files.☆161Apr 24, 2026Updated 4 months ago
- ☆363Dec 9, 2021Updated 4 years ago
- Interactively analyze single cell genomic data☆189Jan 14, 2026Updated 7 months ago
- Automated cell type classification☆116Jan 3, 2025Updated last year