Alternatives and similar repositories for azimuth:

Users that are interested in azimuth are comparing it to the libraries listed below

• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆136Updated 3 years ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆89Updated last year
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆89Updated 3 years ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆108Updated 4 months ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆45Updated 2 years ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆142Updated 2 months ago
• rpolicastro / scProportionTest
  ☆61Updated last year
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆63Updated 5 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆109Updated last month
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆95Updated 7 months ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆100Updated last year
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆98Updated 10 months ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆73Updated 4 years ago
• ncborcherding / escape
  Easy single cell analysis platform for enrichment
  ☆157Updated last month
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆100Updated 7 months ago
• neurorestore / Libra
  ☆159Updated 4 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆170Updated this week
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆92Updated last year
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆133Updated this week
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆139Updated 2 years ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated last year
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆98Updated last year
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆116Updated 5 months ago
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆61Updated 3 years ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆96Updated last month
• PaulingLiu / ROGUE
  Assessing the purity of single cell population
  ☆117Updated 2 years ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆157Updated last month
• huayc09 / SeuratExtend
  ☆115Updated this week
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆155Updated last year
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆78Updated 11 months ago