A Shiny web app for mapping datasets using Seurat v4
☆145Nov 5, 2024Updated last year
Alternatives and similar repositories for azimuth
Users that are interested in azimuth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26May 16, 2025Updated 11 months ago
- Community-provided extensions to Seurat☆361Feb 17, 2026Updated 2 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆258Jan 10, 2026Updated 3 months ago
- Interfaces for HDF5-based Single Cell File Formats☆176Nov 4, 2023Updated 2 years ago
- Dataset distribution for Seurat☆153Mar 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Methods for detecting doublets in single-cell sequencing data☆247Feb 12, 2026Updated 2 months ago
- ☆24Jul 9, 2025Updated 9 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆392May 1, 2026Updated last week
- Fast, sensitive and accurate integration of single-cell data with Harmony☆643Apr 21, 2026Updated 2 weeks ago
- Shiny Interactive Web Apps for Single-Cell Data☆208Apr 24, 2025Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Mar 23, 2026Updated last month
- R toolkit for single cell genomics☆2,721Updated this week
- Scaling Single Cell Analysis to Millions of Cells☆280Apr 9, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Bayesian model for compositional single-cell data analysis☆195Jan 13, 2026Updated 3 months ago
- scDataviz: single cell dataviz and downstream analyses☆66Sep 24, 2021Updated 4 years ago
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆27Jun 1, 2023Updated 2 years ago
- ☆448Apr 29, 2026Updated last week
- Clone of the Bioconductor repository for the SingleR package.☆202Apr 8, 2026Updated last month
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆324Nov 1, 2022Updated 3 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆546Mar 21, 2025Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆239Aug 7, 2024Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Nov 18, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 10 months ago
- R package for integrating and analyzing multiple single-cell datasets☆429Feb 4, 2026Updated 3 months ago
- Gene set scoring for single-cell data☆194Apr 29, 2026Updated last week
- R toolkit for the analysis of single-cell chromatin data☆415Apr 20, 2026Updated 2 weeks ago
- A tool for semi-automatic cell type classification☆473Updated this week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆337Jul 28, 2020Updated 5 years ago
- software to detect doublets☆98Dec 28, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆26Mar 30, 2026Updated last month
- Gene set variation analysis☆241Updated this week
- scPred package for cell type prediction from scRNA-seq data☆101Jan 18, 2024Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆175Dec 29, 2020Updated 5 years ago
- ☆362Dec 9, 2021Updated 4 years ago
- Easy single cell analysis platform for enrichment☆224Apr 3, 2026Updated last month
- Interactively analyze single cell genomic data☆186Jan 14, 2026Updated 3 months ago