satijalab / azimuthView external linksLinks
A Shiny web app for mapping datasets using Seurat v4
☆144Nov 5, 2024Updated last year
Alternatives and similar repositories for azimuth
Users that are interested in azimuth are comparing it to the libraries listed below
Sorting:
- ☆26May 16, 2025Updated 8 months ago
- Community-provided extensions to Seurat☆355Jan 30, 2026Updated 2 weeks ago
- Interfaces for HDF5-based Single Cell File Formats☆170Nov 4, 2023Updated 2 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆250Jan 10, 2026Updated last month
- Shiny Interactive Web Apps for Single-Cell Data☆203Apr 24, 2025Updated 9 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Jan 27, 2026Updated 2 weeks ago
- Methods for detecting doublets in single-cell sequencing data☆230Updated this week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆376Jul 30, 2025Updated 6 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆620Oct 10, 2025Updated 4 months ago
- Dataset distribution for Seurat☆151Mar 6, 2025Updated 11 months ago
- scDataviz: single cell dataviz and downstream analyses☆66Sep 24, 2021Updated 4 years ago
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆26Jun 1, 2023Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆523Mar 21, 2025Updated 10 months ago
- ☆438Jan 8, 2026Updated last month
- A Bayesian model for compositional single-cell data analysis☆188Jan 13, 2026Updated last month
- Clone of the Bioconductor repository for the SingleR package.☆199Jan 5, 2026Updated last month
- ☆24Oct 1, 2025Updated 4 months ago
- R toolkit for single cell genomics☆2,649Feb 6, 2026Updated last week
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- Scaling Single Cell Analysis to Millions of Cells☆257Jan 13, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆183Mar 9, 2024Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆289Jun 17, 2025Updated 7 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆312Nov 1, 2022Updated 3 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆321Jul 28, 2020Updated 5 years ago
- A tool for semi-automatic cell type classification☆451Jan 31, 2026Updated 2 weeks ago
- Easy single cell analysis platform for enrichment☆211Jan 4, 2026Updated last month
- ☆359Dec 9, 2021Updated 4 years ago
- R toolkit for the analysis of single-cell chromatin data☆403Jan 20, 2026Updated 3 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆231Aug 7, 2024Updated last year
- Interactively analyze single cell genomic data☆184Jan 14, 2026Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆425Feb 4, 2026Updated last week
- Convert Seurat objects to 10x Genomics Loupe files.☆148Feb 4, 2026Updated last week
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Nov 18, 2021Updated 4 years ago
- ☆23Jul 9, 2025Updated 7 months ago
- Tools for single-cell data processing☆132May 27, 2024Updated last year
- Gene set variation analysis☆231Dec 14, 2025Updated 2 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆217Dec 18, 2025Updated last month
- Detect doublets in single-cell RNA-seq data☆162Dec 29, 2020Updated 5 years ago