Fast, sensitive and accurate integration of single-cell data with Harmony
☆676Jun 5, 2026Updated 4 months ago
Alternatives and similar repositories for harmony
Users that are interested in harmony are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for detecting doublets in single-cell RNA sequencing data☆570Mar 21, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆433Aug 18, 2026Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- R toolkit for single cell genomics☆2,804Updated this week
- Inferring CNV from Single-Cell RNA-Seq☆684Nov 14, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆497Apr 5, 2024Updated 2 years ago
- ☆468Sep 22, 2026Updated 2 weeks ago
- ☆363Dec 9, 2021Updated 4 years ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆289Updated this week
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆348Jul 28, 2020Updated 6 years ago
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 7 months ago
- A tool for semi-automatic cell type classification☆510May 22, 2026Updated 4 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆247May 8, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Automated, probabilistic assignment of cell types in scRNA-seq data☆217Jan 9, 2023Updated 3 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆206Mar 9, 2024Updated 2 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆232Jul 2, 2026Updated 3 months ago
- Community-provided extensions to Seurat☆372Updated this week
- NicheNet: predict active ligand-target links between interacting cells☆681Sep 25, 2026Updated 2 weeks ago
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 11 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆465Feb 18, 2025Updated last year
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆642Jun 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆271Jan 10, 2026Updated 8 months ago
- R toolkit for the analysis of single-cell chromatin data☆429Sep 11, 2026Updated 3 weeks ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆126May 24, 2026Updated 4 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated last month
- RNA Velocity generalized through dynamical modeling☆512Feb 25, 2026Updated 7 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,870Updated this week
- A toolkit for single-cell immune profiling☆376Sep 25, 2026Updated 2 weeks ago
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 3 months ago
- Reference mapping for single-cell genomics☆412Jun 26, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆488Jun 6, 2025Updated last year
- Fast Wilcoxon and auROC☆218Sep 20, 2026Updated 2 weeks ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,582Updated this week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆127Apr 26, 2025Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆344Nov 1, 2022Updated 3 years ago
- A Bayesian model for compositional single-cell data analysis☆203Jan 13, 2026Updated 8 months ago
- Detect doublets in single-cell RNA-seq data☆182Dec 29, 2020Updated 5 years ago