immunogenomics / harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
☆548Updated 3 months ago
Alternatives and similar repositories for harmony:
Users that are interested in harmony are comparing it to the libraries listed below
- R package for detecting doublets in single-cell RNA sequencing data☆440Updated 2 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆513Updated this week
- Inferring CNV from Single-Cell RNA-Seq☆595Updated 2 weeks ago
- R toolkit for the analysis of single-cell chromatin data☆349Updated last month
- Community-provided extensions to Seurat☆321Updated 2 months ago
- ☆364Updated last month
- A toolkit for single-cell immune profiling☆326Updated last week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆399Updated this week
- A package to help convert different single-cell data formats to each other☆406Updated 11 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆472Updated 10 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆442Updated 9 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆355Updated 3 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆282Updated 4 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆435Updated 10 months ago
- ☆353Updated 3 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆313Updated this week
- R package for integrating and analyzing multiple single-cell datasets☆402Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆350Updated 2 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆220Updated 2 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆283Updated 9 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆479Updated 3 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆311Updated last year
- ☆283Updated 2 years ago
- ☆253Updated 3 months ago
- 🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires☆315Updated 10 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆223Updated last year
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆364Updated last month
- High dimensional weighted gene co-expression network analysis☆379Updated 3 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆306Updated 7 months ago