Interfaces for HDF5-based Single Cell File Formats
☆177Nov 4, 2023Updated 2 years ago
Alternatives and similar repositories for seurat-disk
Users that are interested in seurat-disk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆267Jan 10, 2026Updated 7 months ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 6 months ago
- A Shiny web app for mapping datasets using Seurat v4☆151May 22, 2026Updated 3 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆670Jun 5, 2026Updated 3 months ago
- BANKSY: spatial clustering☆159May 30, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for detecting doublets in single-cell RNA sequencing data☆562Mar 21, 2025Updated last year
- R toolkit for the analysis of single-cell chromatin data☆425Updated this week
- A toolkit for single-cell immune profiling☆375Aug 14, 2026Updated 3 weeks ago
- Inferring CNV from Single-Cell RNA-Seq☆683Nov 14, 2025Updated 9 months ago
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated 2 months ago
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated 2 weeks ago
- Conversion between scRNA-seq objects☆210May 5, 2026Updated 4 months ago
- A Bayesian model for compositional single-cell data analysis☆200Jan 13, 2026Updated 7 months ago
- R toolkit for single cell genomics☆2,795Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆312Jun 17, 2025Updated last year
- High dimensional weighted gene co-expression network analysis☆492Jun 16, 2026Updated 2 months ago
- ☆467May 26, 2026Updated 3 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆342Nov 1, 2022Updated 3 years ago
- Tools and methods for analysis of single cell assay data in R☆264Oct 17, 2025Updated 10 months ago
- ☆35Jul 17, 2026Updated last month
- ☆305Jun 16, 2026Updated 2 months ago
- Detect doublets in single-cell RNA-seq data☆179Dec 29, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNA Velocity generalized through dynamical modeling☆512Feb 25, 2026Updated 6 months ago
- 10x Genomics Single Cell Analysis☆476Aug 17, 2026Updated 3 weeks ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆347Apr 23, 2024Updated 2 years ago
- Community-provided extensions to Seurat☆371Jun 29, 2026Updated 2 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆183Dec 8, 2022Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆202Mar 9, 2024Updated 2 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- Dataset distribution for Seurat☆159Mar 6, 2025Updated last year
- Convert Seurat objects to 10x Genomics Loupe files.☆161Apr 24, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆151Feb 20, 2025Updated last year
- Panoramic stitching of single cell data☆294Jul 14, 2025Updated last year
- A tool for semi-automatic cell type classification☆502May 22, 2026Updated 3 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆212Oct 20, 2025Updated 10 months ago
- CellRank: dynamics from multi-view single-cell data☆456Aug 31, 2026Updated last week
- RNA velocity estimation in R☆196Sep 14, 2023Updated 2 years ago
- Interactively analyze single cell genomic data☆189Jan 14, 2026Updated 7 months ago