Alternatives and similar repositories for seurat-disk:

Users that are interested in seurat-disk are comparing it to the libraries listed below

• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆171Updated last week
• neurorestore / Libra
  ☆165Updated 7 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆186Updated 2 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆268Updated 2 years ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆185Updated 2 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆187Updated 3 weeks ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆148Updated 5 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆138Updated 3 years ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆140Updated 4 months ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆186Updated last week
• navinlabcode / copykat
  ☆228Updated 9 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆198Updated 7 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆199Updated 8 months ago
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆185Updated last year
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆149Updated last year
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆143Updated 3 months ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆161Updated last year
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated last week
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆226Updated last year
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆194Updated this week
• rcastelo / GSVA
  Gene set variation analysis
  ☆213Updated this week
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆221Updated 3 months ago
• statOmics / tradeSeq
  TRAjectory-based Differential Expression analysis for SEQuencing data
  ☆253Updated 2 months ago
• sunduanchen / Scissor
  Scissor package
  ☆214Updated 11 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆249Updated last week
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆168Updated 3 weeks ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆269Updated this week
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆140Updated 3 years ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• huayc09 / SeuratExtend
  ☆133Updated last week