Alternatives and similar repositories for seurat-disk

Users that are interested in seurat-disk are comparing it to the libraries listed below

• neurorestore / Libra
  ☆177Updated 5 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆188Updated this week
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆171Updated last year
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆166Updated 2 weeks ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆196Updated last week
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆211Updated 2 months ago
• navinlabcode / copykat
  ☆256Updated last week
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆221Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆134Updated 11 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆191Updated last month
• huayc09 / SeuratExtend
  ☆179Updated last month
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆210Updated 2 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆231Updated 2 years ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆125Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆177Updated 2 years ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆296Updated 2 years ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆168Updated last year
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆166Updated 2 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆148Updated 3 years ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆119Updated last year
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆191Updated 11 months ago
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆190Updated 2 years ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆195Updated 2 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆183Updated last month
• farrellja / URD
  URD - Reconstruction of Branching Developmental Trajectories
  ☆124Updated 4 years ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆229Updated this week
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆136Updated 3 months ago
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆256Updated last week