mojaveazure / seurat-disk
Interfaces for HDF5-based Single Cell File Formats
☆142Updated 10 months ago
Related projects: ⓘ
- ☆144Updated 3 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆254Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆129Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆152Updated this week
- RNA velocity estimation in R☆177Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆201Updated this week
- Conversion between scRNA-seq objects☆146Updated 2 months ago
- Interactively analyze single cell genomic data☆174Updated 2 weeks ago
- ☆201Updated 2 months ago
- Clone of the Bioconductor repository for the SingleR package.☆172Updated this week
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆153Updated 7 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆160Updated 2 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆207Updated 6 months ago
- Methods for detecting doublets in single-cell sequencing data☆154Updated last week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆112Updated 2 weeks ago
- scDIOR: Single cell data IO softwaRe☆130Updated 2 years ago
- Scissor package☆176Updated 4 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆176Updated 3 weeks ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆116Updated last year
- Scaling Single Cell Analysis to Millions of Cells☆149Updated this week
- Gene set scoring for single-cell data☆133Updated 4 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆170Updated last month
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆210Updated last year
- chromatin Variability Across Regions (of the genome!)☆153Updated 2 months ago
- Cell types enrichment analysis☆180Updated 3 months ago
- Detect doublets in single-cell RNA-seq data☆131Updated 3 years ago
- URD - Reconstruction of Branching Developmental Trajectories☆117Updated 3 years ago
- Easy single cell analysis platform for enrichment☆141Updated this week
- Interpretation of cell states using reference single-cell maps☆243Updated this week
- ☆97Updated 4 months ago