Alternatives and similar repositories for seurat-disk

Users that are interested in seurat-disk are comparing it to the libraries listed below

• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆176Updated this week
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆158Updated 6 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆196Updated 3 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆198Updated 3 weeks ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆153Updated last month
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆154Updated last year
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆279Updated 2 years ago
• neurorestore / Libra
  ☆172Updated last month
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆261Updated 2 weeks ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆162Updated last year
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆147Updated 5 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated 2 weeks ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆208Updated 10 months ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆194Updated last month
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆227Updated 2 years ago
• sunduanchen / Scissor
  Scissor package
  ☆222Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆130Updated 7 months ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆171Updated last month
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆183Updated last week
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆178Updated 11 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆206Updated 9 months ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆217Updated this week
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆120Updated 8 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated last month
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆116Updated 9 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆165Updated 2 years ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆136Updated 10 months ago
• huayc09 / SeuratExtend
  ☆142Updated last week
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆141Updated 3 years ago