Interfaces for HDF5-based Single Cell File Formats
☆177Nov 4, 2023Updated 3 years ago
Alternatives and similar repositories for seurat-disk
Users that are interested in seurat-disk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 8 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆272Jan 10, 2026Updated 9 months ago
- R toolkit for the analysis of single-cell chromatin data☆432Sep 11, 2026Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆574Mar 21, 2025Updated last year
- High dimensional weighted gene co-expression network analysis☆495Jun 16, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Conversion between scRNA-seq objects☆209May 5, 2026Updated 6 months ago
- Inferring CNV from Single-Cell RNA-Seq☆686Updated this week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆346Nov 1, 2022Updated 4 years ago
- Methods for detecting doublets in single-cell sequencing data☆277Oct 18, 2026Updated 2 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆674Oct 15, 2026Updated 3 weeks ago
- A toolkit for single-cell immune profiling☆377Oct 16, 2026Updated 3 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆428Sep 12, 2026Updated last month
- A Bayesian model for compositional single-cell data analysis☆205Jan 13, 2026Updated 9 months ago
- A Shiny web app for mapping datasets using Seurat v4☆151May 22, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Convert Seurat objects to 10x Genomics Loupe files.☆165Oct 27, 2026Updated last week
- Detect doublets in single-cell RNA-seq data☆185Dec 29, 2020Updated 5 years ago
- BANKSY: spatial clustering☆172Oct 28, 2026Updated last week
- Spatial Transcriptomics Capture Location Deconvolution☆216Oct 20, 2025Updated last year
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆249May 23, 2020Updated 6 years ago
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆208Mar 9, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools and methods for analysis of single cell assay data in R☆266Oct 17, 2025Updated last year
- R toolkit for single cell genomics☆2,812Oct 28, 2026Updated last week
- R package for integrating and analyzing multiple single-cell datasets☆435Aug 18, 2026Updated 2 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆648Jun 26, 2025Updated last year
- ☆469Sep 22, 2026Updated last month
- Fast Wilcoxon and auROC☆220Sep 20, 2026Updated last month
- 10x Genomics Single Cell Analysis☆480Aug 17, 2026Updated 2 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆186Jun 24, 2021Updated 5 years ago
- Community-provided extensions to Seurat☆372Oct 8, 2026Updated 3 weeks ago
- Scaling Single Cell Analysis to Millions of Cells☆311Oct 26, 2026Updated last week
- RNA velocity estimation in R☆195Sep 14, 2023Updated 3 years ago
- RNA Velocity generalized through dynamical modeling☆515Feb 25, 2026Updated 8 months ago
- Dataset distribution for Seurat☆162Mar 6, 2025Updated last year
- Doublet detection in single-cell RNA-seq data.☆102Feb 6, 2025Updated last year