Comparison of dimensionality reduction methods
☆30Mar 24, 2020Updated 6 years ago
Alternatives and similar repositories for DRComparison
Users that are interested in DRComparison are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆24Apr 19, 2021Updated 5 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 6 years ago
- ☆16Dec 11, 2018Updated 7 years ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 8 months ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆92Dec 4, 2025Updated 10 months ago
- Iteratively Adjusted Surrogate Variable Analysis☆10Aug 23, 2021Updated 5 years ago
- R package for benchmarking single cell analysis methods☆34Oct 4, 2023Updated 3 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- ☆15Feb 5, 2024Updated 2 years ago
- ☆12May 14, 2024Updated 2 years ago
- ☆15Jun 17, 2021Updated 5 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Jun 1, 2021Updated 5 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 3 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆54Jan 6, 2021Updated 5 years ago
- Differential expression analysis for single-cell RNA-seq data.☆204Oct 21, 2025Updated last year
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- Scripts and utilities for automatic processing & management of Illumina NGS sequencing data within the Bioinformatics Core Facility at th…☆10Aug 20, 2026Updated 2 months ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- Fast phenograph, CyTOF☆26Aug 19, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆18Jun 4, 2019Updated 7 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- ☆33Mar 4, 2024Updated 2 years ago
- ☆11Updated this week
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆109Jul 3, 2023Updated 3 years ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 7 years ago
- ☆55Feb 19, 2025Updated last year
- ☆14May 26, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19May 5, 2019Updated 7 years ago
- ☆20Oct 21, 2026Updated last week
- ☆48Jun 21, 2019Updated 7 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated 2 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Feb 26, 2019Updated 7 years ago
- Extract the Ensembl genes catalog to simple tables☆18Updated this week