xzhoulab / DRComparison
Comparison of dimensionality reduction methods
☆30Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for DRComparison
- ☆16Updated 5 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 3 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated 5 months ago
- A study to compare methods for clustering of scRNA-seq data☆41Updated 4 months ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- Predicted cell-cell interactions of the aging mouse brain☆19Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆43Updated last year
- An analytics package for single cell data☆21Updated 2 years ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 3 weeks ago
- ☆16Updated 3 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- Fast motif matching in R☆43Updated 9 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆14Updated 5 years ago
- ☆10Updated 6 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 2 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- R package for benchmarking single cell analysis methods☆29Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆41Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago