Comparison of dimensionality reduction methods
☆30Mar 24, 2020Updated 6 years ago
Alternatives and similar repositories for DRComparison
Users that are interested in DRComparison are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This contains the dataset for comparing scRNA-seq analysis methods☆93Aug 26, 2020Updated 5 years ago
- K-means clustering for large single-cell datasets☆12Feb 10, 2026Updated last month
- ☆16Dec 11, 2018Updated 7 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- R package for benchmarking single cell analysis methods☆32Oct 4, 2023Updated 2 years ago
- ☆15Jun 17, 2021Updated 4 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Jun 1, 2021Updated 4 years ago
- ☆12May 14, 2024Updated last year
- ☆15Feb 5, 2024Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 2 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15May 4, 2021Updated 4 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Mar 27, 2021Updated 4 years ago
- Fast phenograph, CyTOF☆26Aug 19, 2022Updated 3 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- ☆32Mar 4, 2024Updated 2 years ago
- ☆55Feb 19, 2025Updated last year
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆14May 26, 2020Updated 5 years ago
- ☆19Jun 5, 2024Updated last year
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19May 5, 2019Updated 6 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Jun 4, 2019Updated 6 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 5 months ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 6 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated 11 months ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- ☆20Mar 28, 2017Updated 8 years ago
- ☆21Jun 29, 2022Updated 3 years ago
- vIPer: a new tool for IPython notebooks.☆60Jan 7, 2015Updated 11 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆109Jul 3, 2023Updated 2 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 4 years ago
- post-clustering differential expression test☆36May 28, 2019Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58May 5, 2021Updated 4 years ago