Bioconductor / TENxBrainAnalysis
R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics
☆12Updated last year
Alternatives and similar repositories for TENxBrainAnalysis:
Users that are interested in TENxBrainAnalysis are comparing it to the libraries listed below
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated last month
- SummarizedBenchmark defines a flexible framework for benchmarking computational methods in R.☆15Updated 3 years ago
- Interactive benchmarking of ranking and assignment methods☆14Updated last month
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 6 years ago
- Various Ideas for Confounder Adjustment in Regression☆23Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 2 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 months ago
- Template for building a bioconductor workshop package using github actions☆20Updated 7 months ago
- ☆12Updated 6 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆39Updated 9 months ago
- BioC2020: Where Software and Biology Connect☆12Updated last year
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- Computable build reports, package metadata, and download stats from the Bioconductor project☆20Updated 3 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 9 months ago
- ☆19Updated 7 years ago
- home of the bear's lair☆10Updated 7 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 7 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- scRNA-seq data visualization from scrattch☆25Updated 10 months ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 3 months ago
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Updated 8 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆43Updated 11 months ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- Archived version of RUVSeq☆8Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago