caleblareau / mgatkLinks
mgatk: mitochondrial genome analysis toolkit
☆108Updated 8 months ago
Alternatives and similar repositories for mgatk
Users that are interested in mgatk are comparing it to the libraries listed below
Sorting:
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- Links to ATAC-seq analysis tools☆70Updated 4 years ago
- Tools for single-cell data processing☆127Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 7 months ago
- Basic workflow for ATAC-seq analysis☆86Updated last year
- SNV calling from single cell sequencing☆109Updated 10 months ago
- ☆119Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 2 weeks ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆71Updated 3 weeks ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated 10 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆112Updated 2 years ago
- ☆88Updated 4 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆150Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆52Updated last year
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- ☆96Updated last week
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆62Updated 2 years ago
- ☆81Updated last year
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 2 months ago
- Tutorial Website☆59Updated 4 years ago