caleblareau / mgatkLinks
mgatk: mitochondrial genome analysis toolkit
☆108Updated 6 months ago
Alternatives and similar repositories for mgatk
Users that are interested in mgatk are comparing it to the libraries listed below
Sorting:
- SNV calling from single cell sequencing☆104Updated 8 months ago
- Tools for single-cell data processing☆126Updated last year
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 8 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- Basic workflow for ATAC-seq analysis☆82Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 6 months ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆110Updated 8 months ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- ☆117Updated last year
- ☆77Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- ☆75Updated 3 months ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- Efficient genotyping bi-allelic SNPs on single cells☆146Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated last year
- ☆86Updated 4 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 8 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆87Updated 3 months ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆65Updated 2 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 weeks ago
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago