caleblareau / mgatk
mgatk: mitochondrial genome analysis toolkit
☆102Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for mgatk
- Full-length transcriptome splicing and mutation analysis☆73Updated 4 months ago
- SNV calling from single cell sequencing☆82Updated last week
- HMMRATAC peak caller for ATAC-seq data☆98Updated 2 years ago
- ☆115Updated last year
- Tools for single-cell data processing☆118Updated 5 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆102Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆101Updated 4 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated last year
- Basic workflow for ATAC-seq analysis☆70Updated 8 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆50Updated 3 years ago
- ☆67Updated 10 months ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆73Updated 5 months ago
- ☆72Updated this week
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated 3 weeks ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆60Updated 2 weeks ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆75Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆158Updated 3 months ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆80Updated 3 weeks ago
- Publication quality NGS track plotting☆106Updated 2 years ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆60Updated 11 months ago
- ☆100Updated 6 months ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆25Updated 3 years ago
- ☆59Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 3 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆43Updated 3 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated last month