ggjlab / scHCL
☆47Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for scHCL
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆48Updated 2 weeks ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year
- scWGCNA☆55Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆46Updated last year
- ☆31Updated 5 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆72Updated 3 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- A R package for advanced single cell data viz☆59Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆28Updated 10 months ago
- ☆53Updated 3 years ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆40Updated last year
- ☆46Updated last year
- ☆37Updated 3 years ago
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆27Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- ☆33Updated 5 years ago
- ☆26Updated last year
- Functions for single cell data analysis☆27Updated 3 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- ☆42Updated 4 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated last year