chung-lab / SCAFELinks
Single Cell Analysis of Five'Ends
☆50Updated last year
Alternatives and similar repositories for SCAFE
Users that are interested in SCAFE are comparing it to the libraries listed below
Sorting:
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆77Updated 6 months ago
- ☆59Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆51Updated last year
- ☆51Updated last year
- scWGCNA☆61Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- ☆42Updated 3 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- ☆47Updated 8 months ago
- ☆33Updated 6 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 8 months ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- Tools for single-cell data processing☆126Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- ☆34Updated 6 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆79Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- ☆32Updated 7 months ago
- ☆88Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- ☆55Updated 4 years ago