chung-lab / SCAFELinks
Single Cell Analysis of Five'Ends
☆50Updated last year
Alternatives and similar repositories for SCAFE
Users that are interested in SCAFE are comparing it to the libraries listed below
Sorting:
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆78Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆63Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- ☆41Updated last month
- scWGCNA☆61Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆52Updated 4 years ago
- ☆49Updated 11 months ago
- ☆59Updated 10 months ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- ☆68Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆75Updated 2 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 4 months ago
- ☆32Updated 5 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 7 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆16Updated 6 years ago
- ☆33Updated 6 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Functional Inference of Gene Regulation☆45Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆34Updated 6 years ago
- ☆76Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- ☆55Updated 4 years ago