chung-lab / SCAFE
Single Cell Analysis of Five'Ends
☆48Updated last year
Alternatives and similar repositories for SCAFE:
Users that are interested in SCAFE are comparing it to the libraries listed below
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- ☆59Updated 7 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆48Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- scWGCNA☆58Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- ☆54Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 4 years ago
- Functional Inference of Gene Regulation☆41Updated 9 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆46Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 2 weeks ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆45Updated 8 months ago
- ☆35Updated 7 months ago
- ☆26Updated 8 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆45Updated 2 weeks ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆33Updated 5 years ago
- ☆61Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Analysis of Paired-Tag datasets☆39Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆75Updated last month
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆41Updated 3 years ago