A tool for removing doublets from single-cell RNA-seq data
☆75Dec 2, 2020Updated 5 years ago
Alternatives and similar repositories for DoubletDecon
Users that are interested in DoubletDecon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for detecting doublets in single-cell RNA sequencing data☆554Mar 21, 2025Updated last year
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 7 years ago
- Doublet detection in single-cell RNA-seq data.☆98Feb 6, 2025Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆267Jan 10, 2026Updated 6 months ago
- software to detect doublets☆98Dec 28, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- Genetic multiplexing of barcoded single cell RNA-seq☆138Jul 1, 2024Updated 2 years ago
- Cell type prioritization in single-cell data☆144Mar 26, 2026Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆25Jul 11, 2021Updated 5 years ago
- Methods for detecting doublets in single-cell sequencing data☆258Jul 7, 2026Updated 2 weeks ago
- A Shiny web app for mapping datasets using Seurat v4☆150May 22, 2026Updated 2 months ago
- Interactively analyze single cell genomic data☆188Jan 14, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tools for single-cell data processing☆137May 27, 2024Updated 2 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆342Apr 23, 2024Updated 2 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- ☆134Nov 17, 2023Updated 2 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆243May 8, 2023Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆104Apr 16, 2026Updated 3 months ago
- ☆68Aug 2, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Inferring CNV from Single-Cell RNA-Seq☆678Nov 14, 2025Updated 8 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆306Jun 17, 2025Updated last year
- Community-provided extensions to Seurat☆369Jun 29, 2026Updated 3 weeks ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆59May 5, 2021Updated 5 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆346Jul 28, 2020Updated 5 years ago
- ☆364Dec 9, 2021Updated 4 years ago
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆18Aug 28, 2020Updated 5 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆666Jun 5, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆85Dec 11, 2023Updated 2 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆126Apr 16, 2025Updated last year
- Multi-subject Single Cell Deconvolution☆304Mar 4, 2024Updated 2 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 6 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆237Jul 6, 2026Updated 2 weeks ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆204Jul 7, 2026Updated 2 weeks ago