URD - Reconstruction of Branching Developmental Trajectories
☆128Jun 29, 2021Updated 5 years ago
Alternatives and similar repositories for URD
Users that are interested in URD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jul 25, 2019Updated 7 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆246May 23, 2020Updated 6 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- RNA Velocity generalized through dynamical modeling☆506Feb 25, 2026Updated 5 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆147Apr 5, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Single cell trajectory detection☆331Jul 15, 2026Updated 3 weeks ago
- RNA velocity estimation in R☆196Sep 14, 2023Updated 2 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated last month
- Tools for single-cell data processing☆138May 27, 2024Updated 2 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆184Dec 18, 2021Updated 4 years ago
- Reconstruction of complex single-cell trajectories using CellRouter☆46Dec 14, 2018Updated 7 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆30Nov 29, 2019Updated 6 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆462Feb 18, 2025Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆78Feb 27, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 9 years ago
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 5 months ago
- ☆60Mar 18, 2026Updated 4 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆309Jun 17, 2025Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆262Jan 16, 2026Updated 6 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆343Apr 23, 2024Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆557Mar 21, 2025Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 4 years ago
- scRNA-seq data visualization from scrattch☆30Aug 20, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆295Jul 15, 2022Updated 4 years ago
- Multiome GRN inference.☆141Apr 10, 2026Updated 4 months ago
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- A software package for analyzing snapshots of developmental processes☆165Sep 15, 2022Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆667Jun 5, 2026Updated 2 months ago
- R package for semi-supervised single-cell data integration☆101Jan 27, 2026Updated 6 months ago
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 6 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆442May 11, 2026Updated 2 months ago
- chromatin Variability Across Regions (of the genome!)☆193May 1, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- R package for single cell and other data analysis using diffusion maps☆108Jul 22, 2026Updated 2 weeks ago
- A collection of 50+ trajectory inference methods within a common interface 📥📤☆132Dec 21, 2023Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆94Jun 22, 2022Updated 4 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆178Jan 26, 2024Updated 2 years ago
- Bench-marking classification tools for scRNA-seq data☆196Jun 9, 2022Updated 4 years ago