farrellja / URD
URD - Reconstruction of Branching Developmental Trajectories
☆124Updated 3 years ago
Alternatives and similar repositories for URD:
Users that are interested in URD are comparing it to the libraries listed below
- A guide to using a Seurat object in conjunction with RNA Velocity☆138Updated 3 years ago
- Tools for single-cell data processing☆124Updated 11 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆103Updated last month
- AUCell: score single cells with gene regulatory networks☆152Updated last year
- chromatin Variability Across Regions (of the genome!)☆173Updated 9 months ago
- ☆105Updated last year
- RNA velocity estimation in R☆185Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆145Updated 3 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆115Updated 8 months ago
- ☆231Updated 10 months ago
- ☆166Updated this week
- A tool for detecting somatic variants in single cell data☆202Updated 7 months ago
- Interfaces for HDF5-based Single Cell File Formats☆163Updated last year
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Clustering scRNAseq by genotypes☆179Updated 5 months ago
- reticulate-free single cell format conversion☆145Updated 5 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated last month
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆273Updated 2 years ago
- RNA velocity estimation in Python☆168Updated last week
- The integration of single cell rank-based gene set enrichment analysis☆123Updated 9 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆94Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆188Updated 2 months ago
- Methods to discover gene programs on single-cell data☆114Updated 2 weeks ago
- Interactively analyze single cell genomic data☆182Updated this week