R package for integrating and analyzing multiple single-cell datasets
☆433Aug 18, 2026Updated last month
Alternatives and similar repositories for liger
Users that are interested in liger are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆232Jul 2, 2026Updated 3 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆676Jun 5, 2026Updated 4 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆570Mar 21, 2025Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆246Jul 6, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆345Nov 1, 2022Updated 3 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated last month
- TRAjectory-based Differential Expression analysis for SEQuencing data☆315Jun 17, 2025Updated last year
- Interpretation of cell states using reference single-cell maps☆327Dec 19, 2025Updated 9 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆272Jan 10, 2026Updated 9 months ago
- CellRank: dynamics from multi-view single-cell data☆457Oct 5, 2026Updated last week
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆179Jan 26, 2024Updated 2 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- Automated cell type classification☆117Jan 3, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆247May 8, 2023Updated 3 years ago
- Reference mapping for single-cell genomics☆412Jun 26, 2026Updated 3 months ago
- High dimensional weighted gene co-expression network analysis☆494Jun 16, 2026Updated 3 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- ☆363Dec 9, 2021Updated 4 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆424Sep 12, 2026Updated last month
- Methods for detecting doublets in single-cell sequencing data☆272Updated this week
- NicheNet: predict active ligand-target links between interacting cells☆681Sep 25, 2026Updated 2 weeks ago
- Community-provided extensions to Seurat☆372Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interactively analyze single cell genomic data☆190Updated this week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆313Jun 30, 2026Updated 3 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆127Apr 16, 2025Updated last year
- R toolkit for single cell genomics☆2,804Updated this week
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆149Apr 5, 2024Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆156Sep 27, 2026Updated 2 weeks ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆348Jul 28, 2020Updated 6 years ago
- AUCell: score single cells with gene regulatory networks☆206Mar 9, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆465Feb 18, 2025Updated last year
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 7 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆217Jan 9, 2023Updated 3 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆252Aug 7, 2024Updated 2 years ago
- Multi-subject Single Cell Deconvolution☆315Mar 4, 2024Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆312Mar 6, 2023Updated 3 years ago
- R toolkit for the analysis of single-cell chromatin data☆430Sep 11, 2026Updated last month