welch-lab / ligerLinks
R package for integrating and analyzing multiple single-cell datasets
☆420Updated last month
Alternatives and similar repositories for liger
Users that are interested in liger are comparing it to the libraries listed below
Sorting:
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆313Updated 5 years ago
- A toolkit for single-cell immune profiling☆356Updated this week
- Community-provided extensions to Seurat☆351Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆301Updated 3 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆440Updated 9 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆318Updated last year
- ☆359Updated 4 years ago
- A package to help convert different single-cell data formats to each other☆448Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆242Updated 7 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Updated 2 years ago
- ☆279Updated last year
- ☆424Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆404Updated 3 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆365Updated 4 months ago
- ☆259Updated 2 months ago
- Interpretation of cell states using reference single-cell maps☆300Updated 4 months ago
- NicheNet: predict active ligand-target links between interacting cells☆598Updated last month
- ☆290Updated 3 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆280Updated this week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆296Updated 2 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆303Updated last month
- Tools and methods for analysis of single cell assay data in R☆258Updated last month
- High dimensional weighted gene co-expression network analysis☆450Updated last month
- Table of software for the analysis of single-cell RNA-seq data.☆333Updated this week
- R package for detecting doublets in single-cell RNA sequencing data☆514Updated 8 months ago
- Clone of the Bioconductor repository for the SingleR package.☆199Updated last month
- R toolkit for the analysis of single-cell chromatin data☆399Updated this week
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆234Updated 2 years ago
- Multi-subject Single Cell Deconvolution☆276Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆212Updated last month