welch-lab / ligerLinks
R package for integrating and analyzing multiple single-cell datasets
☆420Updated last month
Alternatives and similar repositories for liger
Users that are interested in liger are comparing it to the libraries listed below
Sorting:
- Community-provided extensions to Seurat☆352Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆311Updated 5 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆403Updated 3 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆299Updated 3 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆436Updated 9 months ago
- A toolkit for single-cell immune profiling☆355Updated this week
- A package to help convert different single-cell data formats to each other☆448Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆366Updated 4 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Updated 2 years ago
- High dimensional weighted gene co-expression network analysis☆449Updated last month
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆315Updated last year
- ☆359Updated 3 years ago
- ☆257Updated last month
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆302Updated last month
- ☆423Updated 2 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆242Updated 7 months ago
- ☆277Updated last year
- Interpretation of cell states using reference single-cell maps☆300Updated 3 months ago
- ☆290Updated 3 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆295Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆279Updated this week
- Tools and methods for analysis of single cell assay data in R☆258Updated last month
- Table of software for the analysis of single-cell RNA-seq data.☆332Updated this week
- R toolkit for the analysis of single-cell chromatin data☆395Updated this week
- R package for detecting doublets in single-cell RNA sequencing data☆511Updated 8 months ago
- NicheNet: predict active ligand-target links between interacting cells☆596Updated 3 weeks ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆512Updated last month
- Tutorial for scRNA-seq data analysis beginners using R☆233Updated 9 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆234Updated 2 years ago
- Multi-subject Single Cell Deconvolution☆276Updated last year