CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
☆423Sep 12, 2026Updated last week
Alternatives and similar repositories for CellBender
Users that are interested in CellBender are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Methods for detecting doublets in single-cell sequencing data☆267Aug 31, 2026Updated 3 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆343Nov 1, 2022Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆179Dec 29, 2020Updated 5 years ago
- A tool for semi-automatic cell type classification☆504May 22, 2026Updated 4 months ago
- Reference mapping for single-cell genomics☆411Jun 26, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is the alpha version of the CellOracle package☆500Apr 30, 2026Updated 4 months ago
- A Bayesian model for compositional single-cell data analysis☆203Jan 13, 2026Updated 8 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆566Mar 21, 2025Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆448Aug 25, 2026Updated 3 weeks ago
- CellRank: dynamics from multi-view single-cell data☆456Updated this week
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 7 months ago
- software to detect doublets☆98Dec 28, 2024Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆204Mar 9, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆638Jun 26, 2025Updated last year
- RNA Velocity generalized through dynamical modeling☆512Feb 25, 2026Updated 6 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆250Aug 7, 2024Updated 2 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆680Jun 1, 2026Updated 3 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆487Jun 6, 2025Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆311Jun 30, 2026Updated 2 months ago
- ☆314Nov 10, 2024Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,695Updated this week
- ☆363Dec 9, 2021Updated 4 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆126May 24, 2026Updated 3 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆266Updated this week
- Inferring CNV from Single-Cell RNA-Seq☆685Nov 14, 2025Updated 10 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆470Apr 11, 2026Updated 5 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆264Jan 16, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆510Jul 26, 2026Updated last month
- Single-cell analysis in Python. Scales to >100M cells.☆2,563Updated this week
- Fast, sensitive and accurate integration of single-cell data with Harmony☆672Jun 5, 2026Updated 3 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆72Jul 9, 2026Updated 2 months ago
- R package for semi-supervised single-cell data integration☆102Aug 19, 2026Updated last month
- A Shiny web app for mapping datasets using Seurat v4☆151May 22, 2026Updated 4 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆465Feb 18, 2025Updated last year