CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
☆388Jul 30, 2025Updated 8 months ago
Alternatives and similar repositories for CellBender
Users that are interested in CellBender are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Methods for detecting doublets in single-cell sequencing data☆241Feb 12, 2026Updated 2 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆319Nov 1, 2022Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆170Dec 29, 2020Updated 5 years ago
- A tool for semi-automatic cell type classification☆466Mar 21, 2026Updated 3 weeks ago
- Reference mapping for single-cell genomics☆401Mar 21, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R package for detecting doublets in single-cell RNA sequencing data☆538Mar 21, 2025Updated last year
- This is the alpha version of the CellOracle package☆439Feb 3, 2026Updated 2 months ago
- A Bayesian model for compositional single-cell data analysis☆194Jan 13, 2026Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆425Updated this week
- CellRank: dynamics from multi-view single-cell data☆437Apr 6, 2026Updated last week
- software to detect doublets☆97Dec 28, 2024Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated 2 months ago
- A package to help convert different single-cell data formats to each other☆462Feb 20, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆190Mar 9, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆594Jun 26, 2025Updated 9 months ago
- RNA Velocity generalized through dynamical modeling☆495Feb 25, 2026Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆238Aug 7, 2024Updated last year
- Panoramic stitching of single cell data☆296Jul 14, 2025Updated 9 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 10 months ago
- NicheNet: predict active ligand-target links between interacting cells☆636Nov 12, 2025Updated 5 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆185Mar 27, 2025Updated last year
- ☆293Nov 10, 2024Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆295Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆361Dec 9, 2021Updated 4 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,597Updated this week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆327Apr 23, 2024Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆115Oct 31, 2025Updated 5 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆246Apr 6, 2026Updated last week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆427Mar 30, 2026Updated 2 weeks ago
- Inferring CNV from Single-Cell RNA-Seq☆662Nov 14, 2025Updated 5 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆251Jan 16, 2026Updated 2 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆67Mar 31, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆489Mar 17, 2026Updated 3 weeks ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,408Updated this week
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 2 months ago
- A Shiny web app for mapping datasets using Seurat v4☆144Nov 5, 2024Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆633Updated this week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆446Feb 18, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆777Jan 6, 2024Updated 2 years ago