broadinstitute / CellBenderLinks
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
☆366Updated 4 months ago
Alternatives and similar repositories for CellBender
Users that are interested in CellBender are comparing it to the libraries listed below
Sorting:
- A package to help convert different single-cell data formats to each other☆448Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆299Updated 3 years ago
- ☆277Updated last year
- ☆359Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆420Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆403Updated 3 months ago
- A toolkit for single-cell immune profiling☆355Updated this week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆436Updated 9 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆415Updated 4 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆311Updated 5 years ago
- ☆257Updated last month
- Interpretation of cell states using reference single-cell maps☆300Updated 3 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆302Updated last month
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆393Updated 3 months ago
- RNA Velocity generalized through dynamical modeling☆475Updated 3 weeks ago
- Community-provided extensions to Seurat☆352Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆279Updated this week
- Panoramic stitching of single cell data☆294Updated 4 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆239Updated 10 months ago
- Single-cell epigenomics analysis tools☆301Updated last week
- Single cell RNA sequencing analysis course☆227Updated last week
- Methods for detecting doublets in single-cell sequencing data☆218Updated last month
- A tool for semi-automatic cell type classification☆431Updated last week
- Tutorial for scRNA-seq data analysis beginners using R☆233Updated 9 months ago
- A tool for detecting somatic variants in single cell data☆215Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆242Updated 7 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆234Updated 2 years ago
- Tools and methods for analysis of single cell assay data in R☆258Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆224Updated last year