Episcanpy: Epigenomics Single Cell Analysis in Python
☆151Dec 5, 2024Updated last year
Alternatives and similar repositories for epiScanpy
Users that are interested in epiScanpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 7 months ago
- Convert between AnnData and SingleCellExperiment☆151Jun 1, 2026Updated last week
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆243May 23, 2020Updated 6 years ago
- Benchmarking computational single cell ATAC-seq methods☆184Nov 30, 2020Updated 5 years ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆612Jun 26, 2025Updated 11 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- RNA Velocity generalized through dynamical modeling☆502Feb 25, 2026Updated 3 months ago
- CellRank: dynamics from multi-view single-cell data☆451Updated this week
- muon is a multimodal omics Python framework☆269May 8, 2026Updated last month
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆271Apr 26, 2026Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70May 7, 2026Updated last month
- Spatial Single Cell Analysis in Python☆575Jun 3, 2026Updated last week
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Benchmarking analysis of data integration tools☆421Apr 27, 2026Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆430Feb 4, 2026Updated 4 months ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,482Updated this week
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆183Dec 18, 2021Updated 4 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆256Updated this week
- A Bayesian model for compositional single-cell data analysis☆198Jan 13, 2026Updated 4 months ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆43May 4, 2023Updated 3 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Single-cell epigenomics analysis tools☆319May 19, 2026Updated 3 weeks ago
- ☆28Feb 6, 2019Updated 7 years ago
- A module for working with snap files in Python☆37May 5, 2020Updated 6 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆117Nov 19, 2025Updated 6 months ago
- RNA velocity estimation in Python☆176Oct 7, 2025Updated 8 months ago
- trajectory inference☆109Jan 27, 2025Updated last year
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- Annotated data.☆750Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆338Apr 23, 2024Updated 2 years ago
- ☆133Nov 17, 2023Updated 2 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆656Updated this week
- Multi-Omics Factor Analysis☆405May 21, 2026Updated 3 weeks ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆455Feb 18, 2025Updated last year
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆439Jun 2, 2026Updated last week
- ☆23Jan 6, 2026Updated 5 months ago