colomemaria / epiScanpyLinks
Episcanpy: Epigenomics Single Cell Analysis in Python
☆145Updated 7 months ago
Alternatives and similar repositories for epiScanpy
Users that are interested in epiScanpy are comparing it to the libraries listed below
Sorting:
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆165Updated last year
- Convert between AnnData and SingleCellExperiment☆137Updated this week
- A Bayesian model for compositional single-cell data analysis☆170Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆155Updated 4 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆164Updated 4 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆163Updated this week
- data and model repository for single-cell data☆135Updated last year
- R package to access DoRothEA's regulons☆149Updated last year
- Python package to perform enrichment analysis from omics data.☆215Updated last week
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆137Updated 2 years ago
- Differential expression analysis for single-cell RNA-seq data.☆200Updated 5 months ago
- SingleCellNet: classify single cells across species and platforms☆138Updated last year
- Scanpy use cases.☆86Updated 4 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- ☆131Updated last year
- Tabula Muris Senis☆104Updated 2 years ago
- Test genes for Spatial Variation☆174Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆124Updated last year
- Batch balanced KNN☆167Updated last year
- Clonotype Neighbor Graph Analysis☆90Updated 3 weeks ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆155Updated this week
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆117Updated 3 weeks ago
- Multi-omic velocity inference☆110Updated 9 months ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 5 months ago
- ☆91Updated 4 years ago
- software to detect doublets☆93Updated 7 months ago
- trajectory inference☆104Updated 6 months ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆101Updated 3 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆169Updated last year