colomemaria / epiScanpy
Episcanpy: Epigenomics Single Cell Analysis in Python
☆144Updated 5 months ago
Alternatives and similar repositories for epiScanpy:
Users that are interested in epiScanpy are comparing it to the libraries listed below
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- Python package to perform enrichment analysis from omics data.☆192Updated this week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆126Updated 2 months ago
- Detect doublets in single-cell RNA-seq data☆148Updated 4 years ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆152Updated last week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated last month
- R package to access DoRothEA's regulons☆144Updated last year
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆131Updated 5 months ago
- Differential expression analysis for single-cell RNA-seq data.☆197Updated 2 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆119Updated last year
- Conversion between scRNA-seq objects☆173Updated 2 weeks ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆129Updated 2 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆201Updated 8 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆106Updated 3 months ago
- A Bayesian model for compositional single-cell data analysis☆163Updated 2 years ago
- Convert between AnnData and SingleCellExperiment☆132Updated last week
- software to detect doublets☆92Updated 4 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆144Updated 3 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆112Updated this week
- Benchmarking computational single cell ATAC-seq methods☆182Updated 4 years ago
- Clonotype Neighbor Graph Analysis☆89Updated last month
- Tabula Muris Senis☆101Updated last year
- trajectory inference☆97Updated 3 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆156Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆68Updated 2 months ago
- ☆90Updated 4 years ago
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- Batch balanced KNN☆159Updated last year
- Tools for single-cell data processing☆124Updated 11 months ago